Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.24206 * 55.53772 * 10 9 7 12 12 C 1.53486 * 110.27197 * 177.63348 * 10 9 7 13 13 C 1.50985 * 106.31053 * 118.96187 * 12 10 9 14 14 C 1.38214 * 130.49159 * 179.97438 * 13 12 10 15 15 C 1.38283 * 120.32817 * 179.97438 * 14 13 12 16 16 C 1.38422 * 120.19522 * 0.04493 * 15 14 13 17 17 C 1.37687 * 120.16571 * 359.97438 * 16 15 14 18 18 C 1.39457 * 109.60046 * 0.02562 * 13 12 10 19 19 C 1.47230 * 110.65175 * 359.97438 * 18 13 12 20 20 O 1.21251 * 125.94893 * 180.02562 * 19 18 13 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.08998 * 110.08357 * 238.17714 * 12 10 9 25 25 H 1.09000 * 110.08485 * 359.74810 * 12 10 9 26 26 H 1.07991 * 119.83710 * 359.97438 * 14 13 12 27 27 H 1.07996 * 119.89880 * 180.02562 * 15 14 13 28 28 H 1.08000 * 119.90970 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.96414 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9303 -3.5726 0.8437 12 6 1.4976 -5.0011 0.0600 13 6 1.8636 -5.7475 -1.2004 14 6 1.4734 -6.9948 -1.6502 15 6 1.9440 -7.4809 -2.8562 16 6 2.8112 -6.7212 -3.6223 17 6 3.2095 -5.4769 -3.1876 18 6 2.7376 -4.9748 -1.9646 19 6 3.0155 -3.6921 -1.2975 20 8 3.7370 -2.8129 -1.7176 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 1.8136 -5.5677 0.9358 25 1 0.4220 -4.8280 0.0936 26 1 0.7976 -7.5927 -1.0569 27 1 1.6342 -8.4562 -3.2012 28 1 3.1762 -7.1055 -4.5632 29 1 3.8859 -4.8868 -3.7881 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203837156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -26.788369 kcal Electronic energy + Delta-G solvation = -13753.018315 eV Core-core repulsion = 11412.270781 eV Total energy + Delta-G solvation = -2340.747534 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.23170 -37.64954 -35.21000 -33.06403 -30.89988 -30.03799 -26.56394 -25.24668 -23.05332 -21.46283 -20.88802 -19.16509 -16.83884 -16.30372 -15.62631 -15.26788 -14.55158 -13.82180 -13.67402 -13.59292 -13.07167 -12.85286 -12.72310 -12.34855 -11.70165 -11.53037 -11.17625 -10.87058 -10.80837 -10.52599 -10.09090 -9.87432 -8.89644 -8.85187 -8.62612 -8.44025 -8.24854 -6.30251 -3.98440 0.92307 1.42494 2.92247 3.50529 3.54806 3.72324 3.95534 4.39462 4.62243 4.81696 4.93937 5.01803 5.26221 5.42369 5.46214 5.51026 5.59870 5.69930 5.97775 6.07377 6.17288 6.31200 6.43623 6.48422 6.60397 6.66675 6.96428 7.22531 7.33942 8.19419 8.23684 8.57717 8.94232 9.71618 11.10241 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050002 B = 0.007684 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.844394 B = 3643.111542 C = 3941.025424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 1.068 2.932 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.125 4.125 11 H 0.100 0.900 12 C -0.086 4.086 13 C -0.044 4.044 14 C -0.126 4.126 15 C -0.094 4.094 16 C -0.143 4.143 17 C -0.058 4.058 18 C -0.181 4.181 19 C 0.411 3.589 20 O -0.424 6.424 21 H 0.266 0.734 22 H 0.021 0.979 23 H 0.010 0.990 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -14.931 -3.236 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.634 4.634 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.144 4.144 11 H 0.118 0.882 12 C -0.122 4.122 13 C -0.045 4.045 14 C -0.144 4.144 15 C -0.112 4.112 16 C -0.161 4.161 17 C -0.076 4.076 18 C -0.182 4.182 19 C 0.287 3.713 20 O -0.296 6.296 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.028 0.972 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.409 -12.798 -3.454 13.687 hybrid contribution 0.109 -1.870 -0.112 1.877 sum 3.518 -14.668 -3.567 15.500 Atomic orbital electron populations 1.70808 1.06888 1.30332 1.47289 1.25809 0.96458 1.02735 0.93767 0.83549 0.74862 0.75231 0.76674 1.20921 1.21361 1.21433 1.22085 0.94962 0.91403 1.54941 0.92288 1.19177 0.93327 0.91802 0.96748 1.21951 0.99358 0.96003 0.97116 0.88202 1.21050 1.02017 0.94903 0.94262 1.20813 0.94007 0.93360 0.96289 1.20595 1.01619 0.95171 0.96995 1.21223 0.96358 0.99421 0.94178 1.21001 0.99744 0.94885 1.00445 1.21188 0.97319 0.94987 0.94150 1.21530 1.01333 0.98638 0.96682 1.22493 0.78402 0.83352 0.87094 1.90480 1.30832 1.40008 1.68278 0.92372 0.96059 0.97185 0.89848 0.89166 0.85759 0.85701 0.85684 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.54 13.65 55.43 0.76 -27.79 15 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 15 3 Si 1.07 26.58 29.90 -169.99 -5.08 21.50 15 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.60 -17.42 8.29 -34.44 -0.29 -17.71 15 8 H 0.06 1.76 6.95 -52.48 -0.36 1.40 15 9 C 0.03 0.67 3.55 -27.88 -0.10 0.57 15 10 C -0.13 -2.59 2.98 -91.39 -0.27 -2.87 15 11 H 0.10 2.01 8.14 -51.93 -0.42 1.59 15 12 C -0.09 -1.37 6.46 -27.49 -0.18 -1.55 15 13 C -0.04 -0.70 6.21 -104.04 -0.65 -1.34 15 14 C -0.13 -1.60 10.03 -39.57 -0.40 -1.99 15 15 C -0.09 -1.07 10.05 -39.50 -0.40 -1.46 15 16 C -0.14 -1.75 10.02 -39.71 -0.40 -2.15 15 17 C -0.06 -0.89 10.11 -38.98 -0.39 -1.29 15 18 C -0.18 -3.24 6.11 -104.99 -0.64 -3.89 15 19 C 0.41 8.93 6.95 -30.53 -0.21 8.72 15 20 O -0.42 -10.61 16.58 5.58 0.09 -10.52 15 21 H 0.27 8.17 7.22 -40.82 -0.29 7.87 15 22 H 0.02 0.54 8.01 -51.93 -0.42 0.13 15 23 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 15 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.09 1.42 7.68 -51.93 -0.40 1.02 15 26 H 0.12 1.25 8.06 -52.49 -0.42 0.82 15 27 H 0.13 1.02 8.06 -52.49 -0.42 0.60 15 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 29 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 254.05 15.07 3.83 3.83 Total: -1.00 -33.38 254.05 -7.64 -41.03 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -3.22 Total: -3.45 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -4.02 Total: -24.59 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.76 Total: -27.79 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -5.08 Total: 21.50 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.38 -7.64 -41.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203837156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.241 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds