Wall clock time and date at job start Mon Mar 30 2020 02:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.23678 * 305.70050 * 10 9 7 12 12 C 1.53485 * 110.27272 * 183.70068 * 10 9 7 13 13 C 1.51193 * 106.20779 * 241.05734 * 12 10 9 14 14 C 1.38205 * 130.46803 * 179.97438 * 13 12 10 15 15 C 1.38271 * 120.33172 * 179.97438 * 14 13 12 16 16 C 1.38421 * 120.19659 * 0.02562 * 15 14 13 17 17 C 1.37688 * 120.16428 * 359.96964 * 16 15 14 18 18 C 1.39456 * 109.62377 * 359.92359 * 13 12 10 19 19 C 1.47230 * 110.65108 * 0.04891 * 18 13 12 20 20 O 1.21253 * 125.95149 * 179.97438 * 19 18 13 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 23 23 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 24 24 H 1.08994 * 110.08573 * 0.24847 * 12 10 9 25 25 H 1.09001 * 110.08526 * 121.81937 * 12 10 9 26 26 H 1.08003 * 119.83176 * 359.92676 * 14 13 12 27 27 H 1.08004 * 119.90093 * 180.02562 * 15 14 13 28 28 H 1.08002 * 119.91461 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.96803 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9445 -3.5605 -0.8314 12 6 1.4988 -4.9999 -0.0956 13 6 1.8432 -5.7647 1.1624 14 6 1.4450 -7.0180 1.5875 15 6 1.8949 -7.5217 2.7941 16 6 2.7481 -6.7731 3.5863 17 6 3.1539 -5.5227 3.1766 18 6 2.7035 -5.0031 1.9528 19 6 2.9927 -3.7110 1.3091 20 8 3.7066 -2.8379 1.7544 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5574 0.8881 23 1 0.6247 -2.5564 -0.8919 24 1 0.4240 -4.8261 -0.1463 25 1 1.8310 -5.5529 -0.9742 26 1 0.7785 -7.6067 0.9745 27 1 1.5797 -8.5022 3.1193 28 1 3.0971 -7.1711 4.5277 29 1 3.8200 -4.9415 3.7971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203837171.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:38 Heat of formation + Delta-G solvation = -47.161666 kcal Electronic energy + Delta-G solvation = -13748.976528 eV Core-core repulsion = 11407.345542 eV Total energy + Delta-G solvation = -2341.630986 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.60122 -39.09426 -36.84909 -35.07384 -32.00424 -31.66812 -28.20123 -26.73622 -25.00307 -22.89862 -22.09326 -20.68084 -19.03324 -17.61781 -17.06040 -16.46621 -16.09639 -15.64045 -15.14016 -15.05389 -14.89083 -14.42503 -13.98116 -13.82011 -13.45585 -13.00338 -12.85827 -12.60061 -12.32349 -12.00596 -11.91503 -11.78129 -10.80215 -10.62922 -10.33672 -9.95727 -9.71158 -8.70006 -6.38113 -0.32775 0.37740 1.47166 1.47424 1.56214 1.76374 2.52864 2.78964 3.03714 3.14983 3.51600 3.75161 4.01459 4.12278 4.16507 4.20268 4.42381 4.54916 4.66442 4.81065 4.88177 4.94175 5.03836 5.15266 5.27636 5.41097 5.45500 5.48310 5.94573 5.97108 6.18527 6.53409 6.63916 7.38901 8.71493 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050313 B = 0.007653 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.380932 B = 3657.726155 C = 3953.294119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.037 4.037 3 Si 1.112 2.888 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.609 4.609 8 H 0.044 0.956 9 C 0.032 3.968 10 C -0.130 4.130 11 H 0.099 0.901 12 C -0.074 4.074 13 C -0.049 4.049 14 C -0.123 4.123 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.073 4.073 18 C -0.222 4.222 19 C 0.400 3.600 20 O -0.480 6.480 21 H 0.256 0.744 22 H -0.014 1.014 23 H 0.018 0.982 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.160 0.840 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -17.840 3.509 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.234 4.234 3 Si 0.933 3.067 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.647 4.647 8 H 0.063 0.937 9 C -0.005 4.005 10 C -0.149 4.149 11 H 0.117 0.883 12 C -0.111 4.111 13 C -0.049 4.049 14 C -0.141 4.141 15 C -0.091 4.091 16 C -0.153 4.153 17 C -0.091 4.091 18 C -0.223 4.223 19 C 0.279 3.721 20 O -0.357 6.357 21 H 0.066 0.934 22 H 0.004 0.996 23 H 0.036 0.964 24 H 0.111 0.889 25 H 0.135 0.865 26 H 0.177 0.823 27 H 0.189 0.811 28 H 0.178 0.822 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.105 -15.753 3.725 16.482 hybrid contribution 0.161 -1.129 0.041 1.142 sum 3.266 -16.882 3.766 17.603 Atomic orbital electron populations 1.70926 1.07607 1.29796 1.49175 1.27256 0.96666 1.06481 0.92973 0.83003 0.74228 0.71692 0.77735 1.20174 1.20855 1.19028 1.22427 0.94573 0.93384 1.54321 0.93727 1.19011 0.93761 0.92593 0.95168 1.21901 0.98895 0.97085 0.97008 0.88287 1.20972 1.01456 0.92296 0.96353 1.20940 0.93930 0.94575 0.95485 1.21023 1.01407 0.93645 0.97977 1.21817 0.94002 1.00695 0.92594 1.21429 0.98991 0.93225 1.01688 1.21366 0.97724 0.96528 0.93529 1.21278 1.04825 0.97367 0.98842 1.23072 0.76760 0.84510 0.87723 1.90429 1.33299 1.43124 1.68842 0.93429 0.99601 0.96395 0.88921 0.86491 0.82266 0.81057 0.82178 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.86 13.65 21.45 0.29 -59.57 15 2 C -0.04 -2.23 5.46 84.66 0.46 -1.77 15 3 Si 1.11 54.31 29.90 68.60 2.05 56.36 15 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 5 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 7 C -0.61 -37.06 8.30 25.60 0.21 -36.85 15 8 H 0.04 2.78 7.06 -2.91 -0.02 2.76 15 9 C 0.03 1.69 3.54 29.85 0.11 1.79 15 10 C -0.13 -5.55 2.96 -11.30 -0.03 -5.59 15 11 H 0.10 4.15 8.14 -2.39 -0.02 4.13 15 12 C -0.07 -2.29 6.47 30.17 0.20 -2.10 15 13 C -0.05 -1.44 6.21 -19.42 -0.12 -1.56 15 14 C -0.12 -2.54 10.03 22.27 0.22 -2.32 15 15 C -0.07 -1.26 10.04 22.32 0.22 -1.03 15 16 C -0.14 -2.78 10.02 22.18 0.22 -2.56 15 17 C -0.07 -2.18 10.11 22.66 0.23 -1.95 15 18 C -0.22 -7.98 6.11 -20.10 -0.12 -8.11 15 19 C 0.40 18.22 6.95 28.13 0.20 18.41 15 20 O -0.48 -25.71 16.70 -2.95 -0.05 -25.76 15 21 H 0.26 16.33 7.22 -92.71 -0.67 15.66 15 22 H -0.01 -0.82 8.00 -2.39 -0.02 -0.84 15 23 H 0.02 0.95 8.01 -2.39 -0.02 0.93 15 24 H 0.09 2.81 7.68 -2.39 -0.02 2.79 15 25 H 0.12 2.80 8.14 -2.39 -0.02 2.78 15 26 H 0.16 2.21 8.06 -2.91 -0.02 2.19 15 27 H 0.17 1.45 8.06 -2.91 -0.02 1.43 15 28 H 0.16 2.15 8.06 -2.91 -0.02 2.13 15 29 H 0.12 3.55 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -76.84 254.27 5.33 -71.51 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 1.24 Total: 1.08 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 1.79 Total: -43.62 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.29 Total: -59.57 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 54.31 SS G_CDS: 2.05 Total: 56.36 kcal Total: -76.84 5.33 -71.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203837171.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.345 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds