Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99424 * 2 1 4 4 H 1.48501 * 109.46847 * 239.99591 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47119 * 119.99948 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46869 * 179.97438 * 9 7 2 11 11 O 1.20763 * 120.00124 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99878 * 179.72241 * 10 9 7 13 13 H 1.08999 * 110.55337 * 317.40238 * 12 10 9 14 14 O 1.44384 * 110.61928 * 194.34628 * 12 10 9 15 15 C 1.43741 * 106.97512 * 201.44265 * 14 12 10 16 16 C 1.54095 * 107.29539 * 26.51408 * 15 14 12 17 17 H 1.09006 * 110.48998 * 239.29350 * 16 15 14 18 18 O 1.42902 * 110.60216 * 116.70487 * 16 15 14 19 19 C 1.54808 * 104.18810 * 357.97192 * 16 15 14 20 20 H 1.09002 * 110.90909 * 220.92333 * 19 16 15 21 21 O 1.42901 * 110.94197 * 97.33090 * 19 16 15 22 22 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47210 * 60.00159 * 9 7 2 24 24 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 25 25 H 1.09002 * 109.87934 * 267.08738 * 15 14 12 26 26 H 1.08997 * 110.00036 * 146.01159 * 15 14 12 27 27 H 0.96691 * 114.00367 * 65.16234 * 18 16 15 28 28 H 0.96699 * 113.99836 * 67.27385 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 8 3.4178 -3.4238 0.0010 12 6 1.7282 -5.0653 0.0069 13 1 0.8949 -5.1735 0.7011 14 8 2.7944 -5.9800 0.3407 15 6 2.4087 -7.2729 -0.1551 16 6 1.4543 -7.0421 -1.3428 17 1 0.4871 -7.5068 -1.1509 18 8 2.0222 -7.5527 -2.5507 19 6 1.3102 -5.5027 -1.4202 20 1 0.2785 -5.2186 -1.6274 21 8 2.1941 -4.9556 -2.4007 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8902 25 1 1.8972 -7.8327 0.6280 26 1 3.2891 -7.8223 -0.4884 27 1 2.1352 -8.5130 -2.5570 28 1 1.9736 -5.2011 -3.3096 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212543565.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -205.831394 kcal Electronic energy + Delta-G solvation = -14903.874392 eV Core-core repulsion = 12112.220956 eV Total energy + Delta-G solvation = -2791.653436 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.38122 -39.46616 -37.26813 -36.74585 -35.12902 -31.99527 -30.81631 -29.75827 -26.16675 -24.08055 -22.47655 -20.59007 -18.96584 -18.62096 -18.13016 -17.52231 -16.95192 -16.62536 -16.31848 -15.66093 -15.55541 -14.95219 -14.43342 -14.23132 -13.99346 -13.71211 -13.25476 -12.90453 -12.85147 -12.58858 -12.33305 -12.06182 -11.49856 -11.14570 -11.09431 -10.65429 -10.61664 -10.14399 -8.26311 -6.34124 1.21906 1.38393 1.41235 1.49921 2.36857 2.55811 2.92867 3.08177 3.17757 3.36635 3.60528 3.85166 4.10901 4.21280 4.40957 4.46563 4.64622 4.73043 4.80341 5.10179 5.27778 5.66609 5.75240 6.12406 6.68635 6.75449 6.90286 6.93948 7.34304 8.85173 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.057680 B = 0.007301 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.321788 B = 3834.418066 C = 3929.186144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.048 0.952 9 C -0.016 4.016 10 C 0.370 3.630 11 O -0.486 6.486 12 C 0.026 3.974 13 H 0.144 0.856 14 O -0.387 6.387 15 C 0.007 3.993 16 C 0.056 3.944 17 H 0.124 0.876 18 O -0.567 6.567 19 C 0.085 3.915 20 H 0.114 0.886 21 O -0.567 6.567 22 H 0.269 0.731 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.403 0.597 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -16.788 -2.903 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.066 0.934 9 C -0.053 4.053 10 C 0.247 3.753 11 O -0.360 6.360 12 C -0.032 4.032 13 H 0.161 0.839 14 O -0.307 6.307 15 C -0.070 4.070 16 C -0.004 4.004 17 H 0.142 0.858 18 O -0.376 6.376 19 C 0.025 3.975 20 H 0.131 0.869 21 O -0.375 6.375 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.254 0.746 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.307 -15.647 -2.431 16.001 hybrid contribution 0.038 0.057 -0.344 0.350 sum -2.269 -15.590 -2.774 15.997 Atomic orbital electron populations 1.69999 1.06946 1.28202 1.50854 1.25726 0.95880 1.02517 0.94308 0.85575 0.78502 0.78589 0.78829 1.20010 1.19465 1.19807 1.21346 0.93490 0.91899 1.51810 0.93379 1.19458 0.95011 0.91510 0.99317 1.25121 0.90190 0.91399 0.68622 1.90217 1.21482 1.87750 1.36570 1.24074 0.92283 0.90029 0.96823 0.83910 1.89014 1.42512 1.19570 1.79589 1.24274 1.00356 0.85355 0.96991 1.23906 0.97580 0.94046 0.84885 0.85806 1.86436 1.85517 1.29223 1.36449 1.23478 0.95121 0.91354 0.87551 0.86891 1.86597 1.55863 1.75066 1.19943 0.92257 0.93082 0.92868 0.88458 0.88988 0.74583 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.29 21.45 0.28 -53.78 15 2 C 0.01 0.86 5.46 84.65 0.46 1.32 15 3 Si 0.96 46.18 29.54 68.60 2.03 48.21 15 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 15 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 15 7 C -0.55 -33.29 8.92 25.60 0.23 -33.06 15 8 H 0.05 3.10 6.76 -2.91 -0.02 3.08 15 9 C -0.02 -0.85 5.40 29.10 0.16 -0.69 15 10 C 0.37 18.02 5.76 29.10 0.17 18.19 15 11 O -0.49 -28.03 15.73 16.39 0.26 -27.77 15 12 C 0.03 0.91 3.62 30.53 0.11 1.02 15 13 H 0.14 3.85 8.14 -2.39 -0.02 3.83 15 14 O -0.39 -14.18 10.84 -130.87 -1.42 -15.60 15 15 C 0.01 0.15 7.52 72.35 0.54 0.69 15 16 C 0.06 1.06 4.37 31.58 0.14 1.20 15 17 H 0.12 1.32 8.14 -2.38 -0.02 1.30 15 18 O -0.57 -10.44 12.30 -129.95 -1.60 -12.04 15 19 C 0.08 2.41 4.17 31.89 0.13 2.55 15 20 H 0.11 2.59 8.14 -2.39 -0.02 2.57 15 21 O -0.57 -20.31 12.13 -129.71 -1.57 -21.88 15 22 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 23 H 0.05 2.69 8.14 -2.38 -0.02 2.67 15 24 H 0.05 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.09 1.98 7.97 -2.39 -0.02 1.96 15 27 H 0.40 3.17 9.12 -74.06 -0.68 2.49 15 28 H 0.39 10.64 8.63 -74.06 -0.64 10.00 15 Total: -1.00 -81.38 250.00 -0.20 -81.58 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -0.12 Total: 10.07 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 1.94 Total: -8.78 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.28 Total: -53.78 kcal Atomic # 8 Polarization: -72.96 SS G_CDS: -4.33 Total: -77.29 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -81.38 -0.20 -81.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212543565.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.255 kcal (2) G-P(sol) polarization free energy of solvation -81.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds