Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39898 * 109.47022 * 2 1 4 4 F 1.39897 * 109.46674 * 240.00162 * 2 1 3 5 5 C 1.52992 * 109.46858 * 119.99949 * 2 1 3 6 6 N 1.46508 * 109.46937 * 179.97438 * 5 2 1 7 7 N 1.40026 * 126.20554 * 270.29557 * 6 5 2 8 8 C 1.31228 * 109.11425 * 180.11221 * 7 6 5 9 9 C 1.38701 * 109.07760 * 359.63648 * 8 7 6 10 10 C 1.37461 * 126.20155 * 89.99991 * 6 5 2 11 11 C 1.40229 * 126.66214 * 0.02562 * 10 6 5 12 12 H 1.08001 * 119.99909 * 341.31505 * 11 10 6 13 13 C 1.40169 * 120.00390 * 161.31519 * 11 10 6 14 14 N 1.30755 * 120.00301 * 164.18331 * 13 11 10 15 15 Si 1.86805 * 119.99546 * 344.18261 * 13 11 10 16 16 H 1.48494 * 109.47083 * 91.18179 * 15 13 11 17 17 H 1.48494 * 109.46822 * 211.18316 * 15 13 11 18 18 H 1.48503 * 109.47090 * 331.18274 * 15 13 11 19 19 H 1.09002 * 109.46966 * 300.00221 * 1 2 3 20 20 H 1.09002 * 109.47268 * 59.99825 * 1 2 3 21 21 H 1.08998 * 109.47152 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47766 * 60.00294 * 5 2 1 23 23 H 1.08995 * 109.47564 * 299.99616 * 5 2 1 24 24 H 1.08000 * 125.46245 * 179.90622 * 8 7 6 25 25 H 1.08008 * 126.23403 * 180.23386 * 9 8 7 26 26 H 0.97001 * 119.99731 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5051 -0.7218 1.2489 7 7 4.3317 -1.6977 0.6789 8 6 5.5862 -1.3664 0.8753 9 6 5.6349 -0.1661 1.5686 10 6 4.3174 0.2387 1.8032 11 6 3.9048 1.3992 2.4736 12 1 2.8990 1.7700 2.3421 13 6 4.7977 2.0780 3.3143 14 7 4.5376 3.3025 3.6918 15 14 6.3591 1.2330 3.8952 16 1 7.4620 1.5229 2.9441 17 1 6.7227 1.7378 5.2436 18 1 6.1338 -0.2334 3.9598 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.6767 -1.7489 1.2493 23 1 1.6767 -0.2074 2.1392 24 1 6.4433 -1.9348 0.5457 25 1 6.5279 0.3602 1.8720 26 1 5.1558 3.7723 4.2733 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213175368.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -39.296143 kcal Electronic energy + Delta-G solvation = -14874.446583 eV Core-core repulsion = 12011.219893 eV Total energy + Delta-G solvation = -2863.226690 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.33575 -46.34906 -39.18148 -33.63619 -33.46721 -30.52996 -29.67286 -25.88020 -24.88476 -21.61750 -20.27324 -19.26203 -17.22870 -16.90134 -16.23110 -16.01770 -15.33334 -14.02964 -13.81851 -13.26847 -13.01067 -12.97349 -12.70799 -12.62310 -12.41582 -12.18016 -11.81402 -11.62897 -11.41992 -10.97751 -10.62944 -10.27545 -9.76150 -9.34614 -9.02486 -8.05769 -7.21635 -6.97792 -4.61841 2.94054 3.20071 3.32789 3.44915 3.67081 4.04478 4.14010 4.22148 4.57044 4.73590 4.97488 5.15568 5.34384 5.60941 5.80501 5.88219 5.95677 6.20239 6.77629 6.88686 7.15373 7.37914 7.77137 8.17882 8.23666 8.52779 8.86185 9.30108 10.03362 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.012499 C = 0.010040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.699028 B = 2239.634751 C = 2788.101424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.265 3.735 3 F -0.188 7.188 4 F -0.198 7.198 5 C 0.121 3.879 6 N -0.428 5.428 7 N -0.377 5.377 8 C 0.073 3.927 9 C -0.431 4.431 10 C 0.264 3.736 11 C -0.442 4.442 12 H 0.094 0.906 13 C 0.099 3.901 14 N -0.802 5.802 15 Si 0.925 3.075 16 H -0.269 1.269 17 H -0.298 1.298 18 H -0.242 1.242 19 H 0.090 0.910 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.109 0.891 24 H 0.153 0.847 25 H 0.119 0.881 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -4.019 -1.681 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.227 3.773 3 F -0.169 7.169 4 F -0.179 7.179 5 C -0.005 4.005 6 N -0.215 5.215 7 N -0.197 5.197 8 C -0.110 4.110 9 C -0.461 4.461 10 C 0.146 3.854 11 C -0.477 4.477 12 H 0.112 0.888 13 C -0.123 4.123 14 N -0.427 5.427 15 Si 0.753 3.247 16 H -0.195 1.195 17 H -0.227 1.227 18 H -0.165 1.165 19 H 0.109 0.891 20 H 0.098 0.902 21 H 0.105 0.895 22 H 0.120 0.880 23 H 0.127 0.873 24 H 0.170 0.830 25 H 0.136 0.864 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.282 -4.692 -2.115 8.121 hybrid contribution 1.327 0.642 0.429 1.535 sum -4.955 -4.051 -1.686 6.618 Atomic orbital electron populations 1.22739 0.91958 1.05003 1.05306 1.21773 0.93074 0.76968 0.85492 1.93083 1.90467 1.36591 1.96779 1.93008 1.90660 1.80953 1.53257 1.22108 0.79718 1.02131 0.96502 1.48200 1.02727 1.18890 1.51702 1.76973 1.00960 1.14166 1.27651 1.22903 0.94508 0.95999 0.97612 1.21025 0.95370 1.04941 1.24757 1.18767 0.88562 0.88165 0.89936 1.18502 1.01474 1.04061 1.23681 0.88843 1.25951 0.99327 0.93655 0.93395 1.69595 1.37061 1.09587 1.26486 0.86140 0.80307 0.82201 0.76048 1.19541 1.22654 1.16522 0.89139 0.90167 0.89483 0.88035 0.87256 0.82978 0.86401 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 9.38 37.16 0.35 -2.02 15 2 C 0.26 4.85 2.25 -26.73 -0.06 4.78 15 3 F -0.19 -4.14 16.16 2.25 0.04 -4.10 15 4 F -0.20 -4.07 16.98 2.25 0.04 -4.03 15 5 C 0.12 2.31 5.75 -4.04 -0.02 2.28 15 6 N -0.43 -10.45 3.54 -58.62 -0.21 -10.66 15 7 N -0.38 -9.40 12.54 30.45 0.38 -9.02 15 8 C 0.07 1.75 11.93 -17.64 -0.21 1.54 15 9 C -0.43 -11.16 8.13 -38.83 -0.32 -11.47 15 10 C 0.26 7.00 6.15 -84.01 -0.52 6.48 15 11 C -0.44 -11.93 9.22 -38.11 -0.35 -12.28 15 12 H 0.09 2.58 7.34 -52.49 -0.39 2.19 15 13 C 0.10 2.59 5.51 -17.29 -0.10 2.49 15 14 N -0.80 -21.08 13.92 55.56 0.77 -20.31 15 15 Si 0.93 21.27 24.52 -169.99 -4.17 17.10 15 16 H -0.27 -6.12 6.69 56.52 0.38 -5.74 15 17 H -0.30 -6.53 7.11 56.52 0.40 -6.13 15 18 H -0.24 -5.75 6.56 56.52 0.37 -5.38 15 19 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 23 H 0.11 1.92 7.69 -51.93 -0.40 1.52 15 24 H 0.15 3.03 8.06 -52.49 -0.42 2.60 15 25 H 0.12 2.98 4.21 -52.48 -0.22 2.76 15 26 H 0.29 6.84 8.29 -40.82 -0.34 6.50 15 LS Contribution 234.51 15.07 3.53 3.53 Total: -1.00 -31.46 234.51 -3.14 -34.60 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -2.31 Total: 1.06 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.22 Total: -8.19 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.95 Total: -39.98 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.17 Total: 17.10 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.46 -3.14 -34.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213175368.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.691 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds