Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39898 * 109.47022 * 2 1 4 4 F 1.39897 * 109.46674 * 240.00162 * 2 1 3 5 5 C 1.52992 * 109.46858 * 119.99949 * 2 1 3 6 6 N 1.46508 * 109.46937 * 179.97438 * 5 2 1 7 7 N 1.40026 * 126.20554 * 270.29557 * 6 5 2 8 8 C 1.31228 * 109.11425 * 180.11221 * 7 6 5 9 9 C 1.38701 * 109.07760 * 359.63648 * 8 7 6 10 10 C 1.37461 * 126.20155 * 89.99991 * 6 5 2 11 11 C 1.40229 * 126.66214 * 0.02562 * 10 6 5 12 12 H 1.08001 * 119.99909 * 341.31505 * 11 10 6 13 13 C 1.40169 * 120.00390 * 161.31519 * 11 10 6 14 14 N 1.30755 * 120.00301 * 164.18331 * 13 11 10 15 15 Si 1.86805 * 119.99546 * 344.18261 * 13 11 10 16 16 H 1.48494 * 109.47083 * 91.18179 * 15 13 11 17 17 H 1.48494 * 109.46822 * 211.18316 * 15 13 11 18 18 H 1.48503 * 109.47090 * 331.18274 * 15 13 11 19 19 H 1.09002 * 109.46966 * 300.00221 * 1 2 3 20 20 H 1.09002 * 109.47268 * 59.99825 * 1 2 3 21 21 H 1.08998 * 109.47152 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47766 * 60.00294 * 5 2 1 23 23 H 1.08995 * 109.47564 * 299.99616 * 5 2 1 24 24 H 1.08000 * 125.46245 * 179.90622 * 8 7 6 25 25 H 1.08008 * 126.23403 * 180.23386 * 9 8 7 26 26 H 0.97001 * 119.99731 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 7 3.5051 -0.7218 1.2489 7 7 4.3317 -1.6977 0.6789 8 6 5.5862 -1.3664 0.8753 9 6 5.6349 -0.1661 1.5686 10 6 4.3174 0.2387 1.8032 11 6 3.9048 1.3992 2.4736 12 1 2.8990 1.7700 2.3421 13 6 4.7977 2.0780 3.3143 14 7 4.5376 3.3025 3.6918 15 14 6.3591 1.2330 3.8952 16 1 7.4620 1.5229 2.9441 17 1 6.7227 1.7378 5.2436 18 1 6.1338 -0.2334 3.9598 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.6767 -1.7489 1.2493 23 1 1.6767 -0.2074 2.1392 24 1 6.4433 -1.9348 0.5457 25 1 6.5279 0.3602 1.8720 26 1 5.1558 3.7723 4.2733 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213175368.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -60.492214 kcal Electronic energy + Delta-G solvation = -14875.365714 eV Core-core repulsion = 12011.219893 eV Total energy + Delta-G solvation = -2864.145821 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.88120 -47.92677 -41.08092 -35.61714 -34.98994 -32.14560 -31.47871 -27.44821 -26.83170 -23.07187 -22.20545 -21.07280 -19.06557 -18.48517 -18.02133 -17.56047 -16.95494 -15.88860 -15.63644 -14.88910 -14.83990 -14.65681 -14.28342 -14.16414 -13.77336 -13.54862 -13.40565 -13.15030 -13.06681 -12.80619 -12.29613 -12.06997 -11.64340 -11.27302 -10.95072 -9.96037 -9.14755 -8.94815 -6.64597 1.05483 1.34397 1.50617 1.60223 1.97458 2.17501 2.23989 2.83299 3.07994 3.27649 3.37555 3.67900 4.03885 4.33510 4.45363 4.59407 4.77940 4.87079 4.96858 4.98094 5.21552 5.41121 5.83970 6.15946 6.34023 6.53245 6.91230 7.37593 8.11162 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.012499 C = 0.010040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.699028 B = 2239.634751 C = 2788.101424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.253 3.747 3 F -0.216 7.216 4 F -0.214 7.214 5 C 0.107 3.893 6 N -0.433 5.433 7 N -0.386 5.386 8 C 0.069 3.931 9 C -0.450 4.450 10 C 0.245 3.755 11 C -0.463 4.463 12 H 0.074 0.926 13 C 0.066 3.934 14 N -0.829 5.829 15 Si 0.978 3.022 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.255 1.255 19 H 0.107 0.893 20 H 0.089 0.911 21 H 0.116 0.884 22 H 0.131 0.869 23 H 0.119 0.881 24 H 0.192 0.808 25 H 0.121 0.879 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 -5.032 -1.588 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.216 3.784 3 F -0.197 7.197 4 F -0.195 7.195 5 C -0.016 4.016 6 N -0.221 5.221 7 N -0.206 5.206 8 C -0.114 4.114 9 C -0.480 4.480 10 C 0.126 3.874 11 C -0.498 4.498 12 H 0.092 0.908 13 C -0.154 4.154 14 N -0.455 5.455 15 Si 0.803 3.197 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.179 1.179 19 H 0.125 0.875 20 H 0.108 0.892 21 H 0.135 0.865 22 H 0.149 0.851 23 H 0.137 0.863 24 H 0.209 0.791 25 H 0.139 0.861 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.477 -5.695 -2.025 8.859 hybrid contribution 1.325 0.914 0.352 1.648 sum -5.151 -4.781 -1.672 7.225 Atomic orbital electron populations 1.22742 0.86771 1.07431 1.06661 1.22346 0.96495 0.75277 0.84291 1.93028 1.91208 1.38658 1.96827 1.92970 1.91266 1.81156 1.54099 1.22591 0.77169 1.04312 0.97574 1.48564 1.04552 1.18083 1.50899 1.76903 1.01580 1.14653 1.27472 1.23488 0.95384 0.95708 0.96835 1.21315 0.95397 1.05929 1.25385 1.18913 0.89586 0.88518 0.90423 1.18500 1.01117 1.05024 1.25164 0.90782 1.26579 1.01545 0.94033 0.93204 1.69595 1.38412 1.10307 1.27232 0.85344 0.77435 0.80409 0.76547 1.19111 1.20610 1.17868 0.87464 0.89184 0.86520 0.85061 0.86287 0.79133 0.86107 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 9.38 71.98 0.68 -3.23 15 2 C 0.25 8.97 2.25 30.59 0.07 9.04 15 3 F -0.22 -9.58 16.16 44.97 0.73 -8.85 15 4 F -0.21 -8.57 16.98 44.97 0.76 -7.81 15 5 C 0.11 3.95 5.75 86.38 0.50 4.45 15 6 N -0.43 -20.84 3.54 -339.37 -1.20 -22.04 15 7 N -0.39 -18.65 12.54 -57.58 -0.72 -19.37 15 8 C 0.07 3.20 11.93 84.89 1.01 4.21 15 9 C -0.45 -22.91 8.13 22.76 0.18 -22.73 15 10 C 0.25 12.98 6.15 39.12 0.24 13.22 15 11 C -0.46 -25.31 9.22 23.22 0.21 -25.09 15 12 H 0.07 4.21 7.34 -2.91 -0.02 4.19 15 13 C 0.07 3.45 5.51 85.32 0.47 3.92 15 14 N -0.83 -43.66 13.92 21.87 0.30 -43.35 15 15 Si 0.98 43.23 24.52 68.60 1.68 44.91 15 16 H -0.26 -11.46 6.69 99.48 0.67 -10.79 15 17 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 18 H -0.25 -11.71 6.56 99.48 0.65 -11.06 15 19 H 0.11 2.00 8.14 -2.39 -0.02 1.99 15 20 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.12 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.13 3.96 8.14 -2.39 -0.02 3.94 15 23 H 0.12 4.10 7.69 -2.39 -0.02 4.08 15 24 H 0.19 7.02 8.06 -2.91 -0.02 6.99 15 25 H 0.12 5.96 4.21 -2.91 -0.01 5.94 15 26 H 0.30 14.08 8.29 -92.71 -0.77 13.32 15 Total: -1.00 -67.11 234.51 6.02 -61.09 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.10 Total: 11.63 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.36 Total: -16.21 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.62 Total: -84.77 kcal Atomic # 9 Polarization: -18.15 SS G_CDS: 1.49 Total: -16.66 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.68 Total: 44.91 kcal Total: -67.11 6.02 -61.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213175368.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.602 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds