Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48494 * 109.47083 * 271.15803 * 3 2 1 5 5 H 1.48494 * 109.46822 * 31.15940 * 3 2 1 6 6 H 1.48503 * 109.47090 * 151.15899 * 3 2 1 7 7 C 1.40166 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 344.28693 * 7 2 1 9 9 C 1.40234 * 120.00627 * 164.28890 * 7 2 1 10 10 C 1.39803 * 126.65797 * 341.06986 * 9 7 2 11 11 C 1.38698 * 107.53774 * 180.02562 * 10 9 7 12 12 N 1.31240 * 109.07702 * 0.22865 * 11 10 9 13 13 N 1.37453 * 126.66460 * 161.10797 * 9 7 2 14 14 C 1.46511 * 126.20126 * 0.02562 * 13 9 7 15 15 C 1.53005 * 109.46835 * 90.00133 * 14 13 9 16 16 C 1.52995 * 109.46905 * 179.97438 * 15 14 13 17 17 F 1.39907 * 109.46911 * 64.99957 * 16 15 14 18 18 F 1.39901 * 109.47290 * 184.99739 * 16 15 14 19 19 H 0.97001 * 120.00042 * 0.02562 * 1 2 3 20 20 H 1.08007 * 126.23494 * 0.03037 * 10 9 7 21 21 H 1.08002 * 125.46508 * 179.97438 * 11 10 9 22 22 H 1.08998 * 109.46850 * 209.99923 * 14 13 9 23 23 H 1.09000 * 109.47045 * 330.00122 * 14 13 9 24 24 H 1.09001 * 109.46436 * 300.00006 * 15 14 13 25 25 H 1.08999 * 109.47339 * 59.99602 * 15 14 13 26 26 H 1.08997 * 109.47491 * 305.00248 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4646 2.0606 -1.3997 5 1 1.4515 2.6454 0.7244 6 1 3.5512 1.4332 0.6754 7 6 2.0085 -1.2138 -0.0005 8 1 1.4988 -2.1318 0.2524 9 6 3.3716 -1.2364 -0.3294 10 6 4.0804 -0.2479 -1.0186 11 6 5.3955 -0.6752 -1.1265 12 7 5.5133 -1.8499 -0.5534 13 7 4.2699 -2.2349 -0.0374 14 6 3.9779 -3.4794 0.6786 15 6 3.5643 -4.5592 -0.3234 16 6 3.2600 -5.8589 0.4242 17 9 2.1453 -5.6725 1.2488 18 9 2.9927 -6.8760 -0.4985 19 1 -0.4850 0.8400 -0.0004 20 1 3.6774 0.6796 -1.3979 21 1 6.1938 -0.1305 -1.6088 22 1 4.8673 -3.8055 1.2178 23 1 3.1660 -3.3098 1.3858 24 1 2.6749 -4.2329 -0.8626 25 1 4.3761 -4.7287 -1.0307 26 1 4.1199 -6.1376 1.0333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213175458.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = -48.283220 kcal Electronic energy + Delta-G solvation = -14302.089802 eV Core-core repulsion = 11438.473403 eV Total energy + Delta-G solvation = -2863.616399 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.77027 -46.78198 -39.29803 -34.19833 -33.67093 -30.19573 -29.41510 -25.22464 -24.79123 -21.98145 -20.30618 -19.17197 -17.38611 -17.29578 -16.68959 -16.09839 -15.75705 -14.31391 -14.02831 -13.69404 -13.43546 -13.24554 -13.15702 -12.69750 -12.48934 -11.94399 -11.76949 -11.46737 -11.10885 -10.83409 -10.68901 -10.33875 -9.79294 -9.38157 -9.08588 -8.10104 -7.25552 -7.00987 -4.67204 2.92115 3.17660 3.30991 3.42951 3.60917 4.01092 4.09866 4.12209 4.50334 4.73568 4.80651 5.07739 5.33858 5.54884 5.76363 5.91492 6.22272 6.29907 6.76642 6.85278 7.11875 7.32445 7.74836 8.14046 8.19067 8.48541 8.84284 9.26356 10.00332 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.009838 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.250543 B = 2845.399964 C = 3507.169877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.099 3.901 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.242 1.242 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.259 3.741 10 C -0.428 4.428 11 C 0.071 3.929 12 N -0.385 5.385 13 N -0.425 5.425 14 C 0.161 3.839 15 C -0.191 4.191 16 C 0.267 3.733 17 F -0.204 7.204 18 F -0.210 7.210 19 H 0.289 0.711 20 H 0.118 0.882 21 H 0.152 0.848 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -5.350 1.585 7.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.123 4.123 3 Si 0.754 3.246 4 H -0.195 1.195 5 H -0.226 1.226 6 H -0.165 1.165 7 C -0.483 4.483 8 H 0.110 0.890 9 C 0.140 3.860 10 C -0.459 4.459 11 C -0.112 4.112 12 N -0.206 5.206 13 N -0.213 5.213 14 C 0.037 3.963 15 C -0.230 4.230 16 C 0.213 3.787 17 F -0.185 7.185 18 F -0.191 7.191 19 H 0.099 0.901 20 H 0.136 0.864 21 H 0.169 0.831 22 H 0.097 0.903 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.872 -6.343 1.930 8.228 hybrid contribution -0.557 1.320 -0.394 1.486 sum 4.315 -5.023 1.536 6.797 Atomic orbital electron populations 1.69590 1.08076 1.30646 1.34424 1.25944 0.94699 1.01628 0.90020 0.86125 0.80514 0.78712 0.79266 1.19548 1.22603 1.16549 1.18481 0.90258 0.96586 1.43019 0.89047 1.18783 0.90228 0.86205 0.90777 1.21057 0.95258 1.05457 1.24115 1.22883 0.96510 0.93700 0.98113 1.76903 1.02428 1.16684 1.24628 1.48362 1.06104 1.16348 1.50483 1.20907 1.01222 0.81609 0.92547 1.23181 1.05467 0.93524 1.00863 1.21848 0.86379 0.86797 0.83714 1.93004 1.56839 1.95631 1.73064 1.92966 1.95214 1.62449 1.68509 0.90067 0.86447 0.83058 0.90286 0.89085 0.88681 0.88587 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 13.92 55.56 0.77 -20.14 15 2 C 0.10 2.57 5.51 -17.29 -0.10 2.47 15 3 Si 0.93 20.97 24.53 -169.99 -4.17 16.80 15 4 H -0.27 -5.98 6.69 56.52 0.38 -5.61 15 5 H -0.30 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.24 -5.69 6.56 56.52 0.37 -5.32 15 7 C -0.45 -11.86 9.39 -38.11 -0.36 -12.22 15 8 H 0.09 2.48 7.83 -52.48 -0.41 2.07 15 9 C 0.26 6.64 6.32 -84.01 -0.53 6.11 15 10 C -0.43 -10.69 8.12 -38.83 -0.32 -11.00 15 11 C 0.07 1.62 11.93 -17.63 -0.21 1.41 15 12 N -0.39 -9.08 12.54 30.45 0.38 -8.70 15 13 N -0.43 -9.90 3.69 -58.61 -0.22 -10.11 15 14 C 0.16 2.94 6.16 -4.03 -0.02 2.91 15 15 C -0.19 -3.09 5.76 -26.73 -0.15 -3.25 15 16 C 0.27 3.61 5.29 37.16 0.20 3.81 15 17 F -0.20 -3.21 17.02 2.25 0.04 -3.17 15 18 F -0.21 -3.11 17.34 2.25 0.04 -3.07 15 19 H 0.29 6.81 8.29 -40.82 -0.34 6.47 15 20 H 0.12 2.87 4.22 -52.48 -0.22 2.65 15 21 H 0.15 2.86 8.06 -52.49 -0.42 2.44 15 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.09 1.68 7.48 -51.93 -0.39 1.29 15 24 H 0.09 1.77 8.14 -51.93 -0.42 1.35 15 25 H 0.10 1.53 8.14 -51.93 -0.42 1.10 15 26 H 0.11 1.07 8.14 -51.93 -0.42 0.64 15 LS Contribution 236.32 15.07 3.56 3.56 Total: -1.00 -29.34 236.32 -3.41 -32.75 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -2.32 Total: 1.83 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.49 Total: -9.76 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.94 Total: -38.95 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.08 Total: -6.24 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.17 Total: 16.80 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.34 -3.41 -32.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213175458.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.536 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds