Wall clock time and date at job start Mon Mar 30 2020 02:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86805 * 119.99983 * 2 1 4 4 H 1.48494 * 109.47083 * 271.15803 * 3 2 1 5 5 H 1.48494 * 109.46822 * 31.15940 * 3 2 1 6 6 H 1.48503 * 109.47090 * 151.15899 * 3 2 1 7 7 C 1.40166 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 344.28693 * 7 2 1 9 9 C 1.40234 * 120.00627 * 164.28890 * 7 2 1 10 10 C 1.39803 * 126.65797 * 341.06986 * 9 7 2 11 11 C 1.38698 * 107.53774 * 180.02562 * 10 9 7 12 12 N 1.31240 * 109.07702 * 0.22865 * 11 10 9 13 13 N 1.37453 * 126.66460 * 161.10797 * 9 7 2 14 14 C 1.46511 * 126.20126 * 0.02562 * 13 9 7 15 15 C 1.53005 * 109.46835 * 90.00133 * 14 13 9 16 16 C 1.52995 * 109.46905 * 179.97438 * 15 14 13 17 17 F 1.39907 * 109.46911 * 64.99957 * 16 15 14 18 18 F 1.39901 * 109.47290 * 184.99739 * 16 15 14 19 19 H 0.97001 * 120.00042 * 0.02562 * 1 2 3 20 20 H 1.08007 * 126.23494 * 0.03037 * 10 9 7 21 21 H 1.08002 * 125.46508 * 179.97438 * 11 10 9 22 22 H 1.08998 * 109.46850 * 209.99923 * 14 13 9 23 23 H 1.09000 * 109.47045 * 330.00122 * 14 13 9 24 24 H 1.09001 * 109.46436 * 300.00006 * 15 14 13 25 25 H 1.08999 * 109.47339 * 59.99602 * 15 14 13 26 26 H 1.08997 * 109.47491 * 305.00248 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4646 2.0606 -1.3997 5 1 1.4515 2.6454 0.7244 6 1 3.5512 1.4332 0.6754 7 6 2.0085 -1.2138 -0.0005 8 1 1.4988 -2.1318 0.2524 9 6 3.3716 -1.2364 -0.3294 10 6 4.0804 -0.2479 -1.0186 11 6 5.3955 -0.6752 -1.1265 12 7 5.5133 -1.8499 -0.5534 13 7 4.2699 -2.2349 -0.0374 14 6 3.9779 -3.4794 0.6786 15 6 3.5643 -4.5592 -0.3234 16 6 3.2600 -5.8589 0.4242 17 9 2.1453 -5.6725 1.2488 18 9 2.9927 -6.8760 -0.4985 19 1 -0.4850 0.8400 -0.0004 20 1 3.6774 0.6796 -1.3979 21 1 6.1938 -0.1305 -1.6088 22 1 4.8673 -3.8055 1.2178 23 1 3.1660 -3.3098 1.3858 24 1 2.6749 -4.2329 -0.8626 25 1 4.3761 -4.7287 -1.0307 26 1 4.1199 -6.1376 1.0333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213175458.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:15 Heat of formation + Delta-G solvation = -67.248425 kcal Electronic energy + Delta-G solvation = -14302.912195 eV Core-core repulsion = 11438.473403 eV Total energy + Delta-G solvation = -2864.438792 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.93913 -47.96358 -41.13350 -35.68559 -35.61885 -32.00881 -31.11624 -27.01547 -26.39047 -23.31531 -22.18221 -20.91902 -19.02537 -18.53136 -18.14172 -17.65775 -17.25926 -15.94886 -15.79022 -15.20215 -15.02798 -14.80877 -14.42301 -14.27393 -14.01901 -13.59798 -13.41221 -13.14902 -12.86831 -12.27515 -12.25216 -11.94922 -11.62756 -11.27043 -10.94761 -9.95236 -9.12938 -8.95344 -6.66393 1.07287 1.34299 1.51590 1.60918 2.01221 2.16701 2.24995 2.93793 3.09300 3.36152 3.50665 3.58263 3.96041 4.23362 4.36657 4.40464 4.72001 4.85924 4.95680 5.00072 5.24422 5.41036 5.85297 6.14145 6.36994 6.52714 6.93849 7.40257 8.11264 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.009838 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.250543 B = 2845.399964 C = 3507.169877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.065 3.935 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.471 4.471 8 H 0.066 0.934 9 C 0.239 3.761 10 C -0.444 4.444 11 C 0.069 3.931 12 N -0.386 5.386 13 N -0.429 5.429 14 C 0.152 3.848 15 C -0.181 4.181 16 C 0.272 3.728 17 F -0.218 7.218 18 F -0.216 7.216 19 H 0.299 0.701 20 H 0.121 0.879 21 H 0.193 0.807 22 H 0.113 0.887 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -5.257 1.714 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.154 4.154 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.507 4.507 8 H 0.085 0.915 9 C 0.118 3.882 10 C -0.474 4.474 11 C -0.114 4.114 12 N -0.207 5.207 13 N -0.216 5.216 14 C 0.029 3.971 15 C -0.220 4.220 16 C 0.219 3.781 17 F -0.200 7.200 18 F -0.197 7.197 19 H 0.110 0.890 20 H 0.138 0.862 21 H 0.209 0.791 22 H 0.131 0.869 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.540 -6.280 2.067 9.299 hybrid contribution -1.023 1.211 -0.447 1.648 sum 5.517 -5.068 1.620 7.664 Atomic orbital electron populations 1.69601 1.08999 1.32005 1.35449 1.26604 0.95310 1.03947 0.89547 0.85309 0.78860 0.75805 0.79548 1.18677 1.20878 1.17857 1.18466 0.91069 0.96267 1.44913 0.91537 1.18902 0.90261 0.87655 0.91350 1.21327 0.96327 1.05625 1.24128 1.23478 0.96835 0.93431 0.97698 1.76852 1.02585 1.16997 1.24216 1.48742 1.05567 1.17263 1.50044 1.21231 1.02555 0.80520 0.92773 1.23009 1.04038 0.94475 1.00498 1.22105 0.87289 0.85184 0.83552 1.92981 1.58008 1.95669 1.73341 1.92955 1.95344 1.62416 1.69030 0.88997 0.86183 0.79054 0.86880 0.89914 0.92097 0.87941 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.09 13.92 21.87 0.30 -43.79 15 2 C 0.07 3.39 5.51 85.32 0.47 3.86 15 3 Si 0.98 42.73 24.53 68.60 1.68 44.42 15 4 H -0.26 -10.94 6.69 99.48 0.67 -10.28 15 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 15 6 H -0.25 -11.53 6.56 99.48 0.65 -10.88 15 7 C -0.47 -25.61 9.39 23.22 0.22 -25.39 15 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 15 9 C 0.24 12.24 6.32 39.13 0.25 12.49 15 10 C -0.44 -21.56 8.12 22.76 0.18 -21.37 15 11 C 0.07 2.97 11.93 84.89 1.01 3.98 15 12 N -0.39 -17.28 12.54 -57.57 -0.72 -18.01 15 13 N -0.43 -19.53 3.69 -339.34 -1.25 -20.78 15 14 C 0.15 5.35 6.16 86.38 0.53 5.88 15 15 C -0.18 -5.70 5.76 30.59 0.18 -5.53 15 16 C 0.27 6.83 5.29 71.98 0.38 7.21 15 17 F -0.22 -6.70 17.02 44.97 0.77 -5.93 15 18 F -0.22 -6.04 17.34 44.97 0.78 -5.26 15 19 H 0.30 14.14 8.29 -92.71 -0.77 13.37 15 20 H 0.12 5.67 4.22 -2.91 -0.01 5.66 15 21 H 0.19 6.49 8.06 -2.91 -0.02 6.47 15 22 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 23 H 0.08 3.06 7.48 -2.39 -0.02 3.04 15 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.16 2.48 8.14 -2.39 -0.02 2.46 15 Total: -1.00 -62.61 236.32 5.88 -56.73 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.10 Total: 11.48 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 3.22 Total: -18.86 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.67 Total: -82.58 kcal Atomic # 9 Polarization: -12.73 SS G_CDS: 1.54 Total: -11.19 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.68 Total: 44.42 kcal Total: -62.61 5.88 -56.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213175458.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.516 kcal (2) G-P(sol) polarization free energy of solvation -62.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds