Wall clock time and date at job start Mon Mar 30 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33990 * 124.92493 * 2 1 4 4 C 1.46788 * 106.18385 * 179.75154 * 3 2 1 5 5 C 1.39404 * 134.37034 * 180.22985 * 4 3 2 6 6 C 1.36737 * 119.71628 * 180.02562 * 5 4 3 7 7 C 1.50706 * 119.78979 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47029 * 89.99792 * 7 6 5 9 9 H 1.08000 * 120.00115 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99642 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00297 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99603 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47484 * 90.00289 * 12 10 8 14 14 H 1.48504 * 109.47016 * 210.00017 * 12 10 8 15 15 H 1.48503 * 109.47318 * 329.99614 * 12 10 8 16 16 C 1.38734 * 120.41902 * 0.02562 * 6 5 4 17 17 C 1.37845 * 120.68604 * 359.95101 * 16 6 5 18 18 C 1.38948 * 119.81706 * 0.05026 * 17 16 6 19 19 O 1.34454 * 124.91766 * 180.14773 * 2 1 3 20 20 H 1.09003 * 109.46898 * 89.99296 * 1 2 3 21 21 H 1.08995 * 109.46984 * 209.99244 * 1 2 3 22 22 H 1.08996 * 109.46816 * 329.99726 * 1 2 3 23 23 H 1.08002 * 126.91012 * 0.02562 * 3 2 1 24 24 H 1.08007 * 120.13987 * 0.02562 * 5 4 3 25 25 H 1.09003 * 109.46615 * 210.00249 * 7 6 5 26 26 H 1.08997 * 109.46904 * 329.99892 * 7 6 5 27 27 H 0.96998 * 120.00246 * 179.97438 * 11 10 8 28 28 H 1.08001 * 119.66064 * 179.97438 * 16 6 5 29 29 H 1.08000 * 120.09429 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0986 0.0000 4 6 3.6642 0.6270 0.0061 5 6 4.9075 1.2574 0.0130 6 6 6.0491 0.5048 0.0170 7 6 7.3941 1.1847 0.0250 8 6 7.8354 1.4084 1.4484 9 1 7.2052 1.0897 2.2655 10 6 9.0442 2.0189 1.7075 11 7 9.8118 2.4065 0.7124 12 14 9.5916 2.2955 3.4720 13 1 10.3678 1.1192 3.9397 14 1 10.4434 3.5100 3.5414 15 1 8.3987 2.4775 4.3376 16 6 5.9771 -0.8806 0.0137 17 6 4.7567 -1.5216 0.0074 18 6 3.5845 -0.7756 0.0032 19 8 2.2767 -1.1025 -0.0028 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8899 0.5139 23 1 1.9374 2.1248 0.0004 24 1 4.9687 2.3358 0.0151 25 1 8.1223 0.5553 -0.4867 26 1 7.3193 2.1439 -0.4872 27 1 10.6620 2.8363 0.8947 28 1 6.8866 -1.4631 0.0165 29 1 4.7118 -2.6007 0.0045 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214412169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:02 Heat of formation + Delta-G solvation = -6.538673 kcal Electronic energy + Delta-G solvation = -13401.299973 eV Core-core repulsion = 11061.430531 eV Total energy + Delta-G solvation = -2339.869441 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.34042 -39.20181 -35.31110 -34.20644 -32.81145 -31.87429 -29.09236 -27.63129 -25.31779 -23.04673 -22.26732 -21.76624 -18.52686 -18.28736 -17.26439 -17.19237 -16.59436 -15.86553 -15.02480 -14.69699 -14.51754 -14.01339 -13.91093 -13.84184 -13.51202 -13.24122 -12.99967 -12.79030 -12.56848 -12.45906 -11.83096 -11.53550 -11.48666 -10.96697 -10.61364 -9.29050 -9.01155 -8.21092 -6.34549 0.02740 0.49109 1.39614 1.40470 1.43254 1.52137 1.79531 2.38839 2.85257 3.09528 3.53310 3.78624 4.14645 4.17000 4.35054 4.42739 4.52110 4.61243 4.74592 4.89896 4.94129 5.03413 5.27493 5.30058 5.33511 5.40962 5.59064 5.72865 5.78034 5.98148 6.15132 6.28992 6.77512 7.34010 8.88109 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050587 B = 0.006362 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.368853 B = 4399.988764 C = 4544.708303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.029 3.971 3 C -0.230 4.230 4 C -0.142 4.142 5 C -0.097 4.097 6 C -0.073 4.073 7 C 0.060 3.940 8 C -0.531 4.531 9 H 0.053 0.947 10 C 0.006 3.994 11 N -0.929 5.929 12 Si 0.966 3.034 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.268 1.268 16 C -0.101 4.101 17 C -0.100 4.100 18 C 0.010 3.990 19 O -0.205 6.205 20 H 0.102 0.898 21 H 0.089 0.911 22 H 0.112 0.888 23 H 0.176 0.824 24 H 0.116 0.884 25 H 0.011 0.989 26 H 0.004 0.996 27 H 0.266 0.734 28 H 0.140 0.860 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.631 -5.178 -0.911 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.018 4.018 3 C -0.249 4.249 4 C -0.143 4.143 5 C -0.116 4.116 6 C -0.073 4.073 7 C 0.023 3.977 8 C -0.569 4.569 9 H 0.071 0.929 10 C -0.192 4.192 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.193 1.193 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.036 4.036 19 O -0.108 6.108 20 H 0.121 0.879 21 H 0.108 0.892 22 H 0.130 0.870 23 H 0.193 0.807 24 H 0.134 0.866 25 H 0.029 0.971 26 H 0.022 0.978 27 H 0.075 0.925 28 H 0.158 0.842 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.570 -5.363 -0.955 17.442 hybrid contribution 1.003 0.595 0.642 1.332 sum -15.566 -4.768 -0.313 16.283 Atomic orbital electron populations 1.20643 0.81045 1.05835 1.05359 1.23214 0.95795 0.82859 0.99927 1.22528 0.89404 1.00788 1.12157 1.20245 0.94814 0.93739 1.05492 1.20161 0.90086 0.99780 1.01536 1.20074 0.96061 0.94473 0.96685 1.18081 0.88860 0.94291 0.96450 1.21370 1.03934 1.39172 0.92381 0.92908 1.25910 0.96486 0.95000 1.01839 1.70070 1.12347 1.41271 1.33160 0.85440 0.78310 0.78014 0.79260 1.19497 1.20383 1.19275 1.21000 0.97312 0.93733 0.99899 1.20097 0.87133 1.00547 1.04074 1.19749 0.83613 0.93794 1.06444 1.83882 1.14732 1.35024 1.77151 0.87931 0.89206 0.86978 0.80705 0.86551 0.97052 0.97766 0.92486 0.84187 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.39 71.24 0.74 -0.24 15 2 C 0.03 0.76 7.23 24.72 0.18 0.94 15 3 C -0.23 -6.84 11.01 23.54 0.26 -6.58 15 4 C -0.14 -5.43 6.40 -20.21 -0.13 -5.56 15 5 C -0.10 -4.21 9.68 22.20 0.21 -3.99 15 6 C -0.07 -3.36 5.04 -20.10 -0.10 -3.46 15 7 C 0.06 3.27 5.09 29.10 0.15 3.42 15 8 C -0.53 -30.73 9.09 25.60 0.23 -30.50 15 9 H 0.05 3.03 7.74 -2.91 -0.02 3.01 15 10 C 0.01 0.34 5.46 84.66 0.46 0.81 15 11 N -0.93 -56.10 13.29 21.45 0.28 -55.81 15 12 Si 0.97 44.59 29.54 68.60 2.03 46.62 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 16 C -0.10 -4.05 9.66 22.30 0.22 -3.83 15 17 C -0.10 -3.49 10.07 22.35 0.23 -3.26 15 18 C 0.01 0.38 7.42 22.99 0.17 0.55 15 19 O -0.20 -6.54 10.58 -9.00 -0.10 -6.63 15 20 H 0.10 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.09 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.11 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.18 4.16 8.06 -2.91 -0.02 4.13 15 24 H 0.12 4.96 8.06 -2.91 -0.02 4.94 15 25 H 0.01 0.64 8.08 -2.39 -0.02 0.62 15 26 H 0.00 0.23 8.08 -2.39 -0.02 0.21 15 27 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 28 H 0.14 5.20 8.06 -2.91 -0.02 5.18 15 29 H 0.16 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -68.26 260.11 5.97 -62.29 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.14 Total: 5.26 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 2.62 Total: -51.72 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.28 Total: -55.81 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.10 Total: -6.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.26 5.97 -62.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214412169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.749 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds