Wall clock time and date at job start Mon Mar 30 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47547 * 239.99895 * 3 2 1 5 5 H 1.48500 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47354 * 120.00045 * 3 2 1 7 7 C 1.39939 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99446 * 197.67906 * 7 2 1 9 9 C 1.41046 * 120.00512 * 17.68107 * 7 2 1 10 10 C 1.40734 * 120.29983 * 24.75040 * 9 7 2 11 11 C 1.36457 * 119.94602 * 179.97438 * 10 9 7 12 12 C 1.38885 * 120.58805 * 0.02562 * 11 10 9 13 13 C 1.38192 * 120.61954 * 359.97438 * 12 11 10 14 14 C 1.38700 * 120.02868 * 0.02562 * 13 12 11 15 15 N 1.38961 * 120.28395 * 179.97438 * 14 13 12 16 16 C 1.36486 * 125.84895 * 90.02665 * 15 14 13 17 17 N 1.28250 * 114.54312 * 179.97438 * 16 15 14 18 18 C 1.46958 * 110.21155 * 359.97438 * 17 16 15 19 19 C 1.47293 * 125.84276 * 269.71041 * 15 14 13 20 20 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 21 21 H 1.08007 * 120.03281 * 359.96302 * 10 9 7 22 22 H 1.07997 * 119.70713 * 180.02562 * 11 10 9 23 23 H 1.07997 * 119.69379 * 179.97438 * 12 11 10 24 24 H 1.08001 * 119.97984 * 179.74626 * 13 12 11 25 25 H 1.07996 * 122.72827 * 359.93404 * 16 15 14 26 26 H 1.09008 * 110.54997 * 118.59619 * 18 17 16 27 27 H 1.09005 * 110.55290 * 241.26218 * 18 17 16 28 28 H 1.08999 * 110.69500 * 298.43515 * 19 15 14 29 29 H 1.09001 * 110.69729 * 61.64615 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2119 -0.0005 8 1 3.0500 -1.2341 0.2835 9 6 1.3530 -2.4045 -0.3720 10 6 0.2239 -2.3625 -1.2111 11 6 -0.4041 -3.5207 -1.5664 12 6 0.0603 -4.7462 -1.1067 13 6 1.1669 -4.8151 -0.2818 14 6 1.8249 -3.6538 0.0954 15 7 2.9378 -3.7169 0.9251 16 6 4.2343 -3.8366 0.5157 17 7 5.0924 -3.8742 1.4681 18 6 4.4134 -3.7741 2.7675 19 6 2.9208 -3.6596 2.3968 20 1 -0.4850 0.8400 0.0004 21 1 -0.1454 -1.4144 -1.5734 22 1 -1.2700 -3.4840 -2.2107 23 1 -0.4480 -5.6539 -1.3966 24 1 1.5167 -5.7734 0.0729 25 1 4.5147 -3.8955 -0.5256 26 1 4.5949 -4.6682 3.3640 27 1 4.7429 -2.8842 3.3039 28 1 2.5085 -2.7109 2.7406 29 1 2.3579 -4.4973 2.8085 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214412629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:17 Heat of formation + Delta-G solvation = 54.765829 kcal Electronic energy + Delta-G solvation = -14064.173345 eV Core-core repulsion = 11759.255017 eV Total energy + Delta-G solvation = -2304.918327 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47720 -37.28346 -33.83327 -32.29132 -29.72404 -29.23665 -27.99429 -25.30673 -22.15752 -21.11645 -20.77062 -19.40874 -17.47656 -16.56842 -15.45641 -15.05396 -14.37649 -13.61195 -13.56333 -13.20972 -12.71390 -12.40509 -11.76626 -11.63593 -11.50359 -11.29448 -11.16371 -10.96306 -10.79560 -10.55218 -9.84363 -9.69480 -9.32154 -9.24446 -7.58379 -7.53086 -7.09046 -6.88145 -4.51653 2.60639 2.79411 2.98735 3.02406 3.14351 3.30218 3.82193 4.16828 4.47959 5.18362 5.43015 5.44558 5.66789 6.06473 6.09406 6.10416 6.28828 6.46929 6.49295 6.70979 6.91495 7.02690 7.15622 7.21087 7.40423 7.64400 7.81483 7.95189 8.11498 8.36245 8.63792 8.69159 8.70248 9.02504 10.00039 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.014318 C = 0.009308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.625888 B = 1955.078981 C = 3007.384156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.444 4.444 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.241 4.241 13 C -0.076 4.076 14 C 0.001 3.999 15 N -0.554 5.554 16 C 0.364 3.636 17 N -0.615 5.615 18 C 0.028 3.972 19 C 0.079 3.921 20 H 0.284 0.716 21 H 0.120 0.880 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.174 0.826 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -1.927 0.651 2.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.117 4.117 12 C -0.261 4.261 13 C -0.096 4.096 14 C -0.092 4.092 15 N -0.268 5.268 16 C 0.067 3.933 17 N -0.345 5.345 18 C -0.102 4.102 19 C -0.044 4.044 20 H 0.095 0.905 21 H 0.138 0.862 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.191 0.809 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.053 -1.815 0.898 2.884 hybrid contribution -0.710 0.896 0.172 1.156 sum 1.344 -0.919 1.070 1.948 Atomic orbital electron populations 1.69825 1.07630 1.29711 1.33802 1.25968 0.94737 1.01538 0.92042 0.86345 0.80192 0.79927 0.80279 1.18583 1.20184 1.18911 1.19452 0.98206 0.90916 1.38735 0.90274 1.17795 0.90920 0.91425 0.88457 1.21032 0.98821 0.97242 1.00527 1.20498 0.98527 0.93252 0.99417 1.20227 1.01337 0.96353 1.08200 1.20730 0.95525 0.95795 0.97575 1.17106 0.94955 0.93058 1.04034 1.44627 1.04024 1.74020 1.04110 1.24657 0.81643 0.87597 0.99354 1.74186 1.28899 1.33135 0.98325 1.22935 0.90820 1.01095 0.95388 1.22580 0.97788 1.01492 0.82572 0.90533 0.86173 0.89213 0.89153 0.89213 0.80873 0.91170 0.90992 0.91125 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.34 10.96 55.55 0.61 -18.73 15 2 C 0.08 1.84 5.14 -17.33 -0.09 1.75 15 3 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 15 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.44 -11.25 8.69 -37.88 -0.33 -11.58 15 8 H 0.08 2.02 7.48 -52.49 -0.39 1.63 15 9 C 0.12 2.97 5.58 -106.65 -0.60 2.38 15 10 C -0.16 -3.84 8.64 -39.28 -0.34 -4.18 15 11 C -0.10 -2.18 9.97 -39.98 -0.40 -2.58 15 12 C -0.24 -5.12 10.04 -39.36 -0.40 -5.52 15 13 C -0.08 -1.66 9.96 -39.43 -0.39 -2.05 15 14 C 0.00 0.02 5.78 -83.22 -0.48 -0.46 15 15 N -0.55 -11.72 2.23 -114.30 -0.26 -11.98 15 16 C 0.36 7.19 12.00 -90.87 -1.09 6.10 15 17 N -0.61 -12.20 11.60 -61.70 -0.72 -12.92 15 18 C 0.03 0.49 8.05 -3.15 -0.03 0.47 15 19 C 0.08 1.52 7.70 -2.97 -0.02 1.50 15 20 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 21 H 0.12 3.03 6.17 -52.48 -0.32 2.71 15 22 H 0.09 1.76 8.06 -52.49 -0.42 1.34 15 23 H 0.09 1.69 8.06 -52.49 -0.42 1.27 15 24 H 0.09 1.78 8.06 -52.49 -0.42 1.36 15 25 H 0.17 3.04 8.06 -52.49 -0.42 2.62 15 26 H 0.07 1.12 8.14 -51.92 -0.42 0.69 15 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 254.00 15.07 3.83 3.83 Total: -1.00 -26.45 254.00 -8.96 -35.40 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.23 Total: 5.28 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -4.16 Total: -14.17 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.36 Total: -43.63 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.45 -8.96 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214412629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.169 kcal (2) G-P(sol) polarization free energy of solvation -26.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds