Wall clock time and date at job start Mon Mar 30 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47547 * 239.99895 * 3 2 1 5 5 H 1.48500 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47354 * 120.00045 * 3 2 1 7 7 C 1.39939 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99446 * 197.67906 * 7 2 1 9 9 C 1.41046 * 120.00512 * 17.68107 * 7 2 1 10 10 C 1.40734 * 120.29983 * 24.75040 * 9 7 2 11 11 C 1.36457 * 119.94602 * 179.97438 * 10 9 7 12 12 C 1.38885 * 120.58805 * 0.02562 * 11 10 9 13 13 C 1.38192 * 120.61954 * 359.97438 * 12 11 10 14 14 C 1.38700 * 120.02868 * 0.02562 * 13 12 11 15 15 N 1.38961 * 120.28395 * 179.97438 * 14 13 12 16 16 C 1.36486 * 125.84895 * 90.02665 * 15 14 13 17 17 N 1.28250 * 114.54312 * 179.97438 * 16 15 14 18 18 C 1.46958 * 110.21155 * 359.97438 * 17 16 15 19 19 C 1.47293 * 125.84276 * 269.71041 * 15 14 13 20 20 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 21 21 H 1.08007 * 120.03281 * 359.96302 * 10 9 7 22 22 H 1.07997 * 119.70713 * 180.02562 * 11 10 9 23 23 H 1.07997 * 119.69379 * 179.97438 * 12 11 10 24 24 H 1.08001 * 119.97984 * 179.74626 * 13 12 11 25 25 H 1.07996 * 122.72827 * 359.93404 * 16 15 14 26 26 H 1.09008 * 110.54997 * 118.59619 * 18 17 16 27 27 H 1.09005 * 110.55290 * 241.26218 * 18 17 16 28 28 H 1.08999 * 110.69500 * 298.43515 * 19 15 14 29 29 H 1.09001 * 110.69729 * 61.64615 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2119 -0.0005 8 1 3.0500 -1.2341 0.2835 9 6 1.3530 -2.4045 -0.3720 10 6 0.2239 -2.3625 -1.2111 11 6 -0.4041 -3.5207 -1.5664 12 6 0.0603 -4.7462 -1.1067 13 6 1.1669 -4.8151 -0.2818 14 6 1.8249 -3.6538 0.0954 15 7 2.9378 -3.7169 0.9251 16 6 4.2343 -3.8366 0.5157 17 7 5.0924 -3.8742 1.4681 18 6 4.4134 -3.7741 2.7675 19 6 2.9208 -3.6596 2.3968 20 1 -0.4850 0.8400 0.0004 21 1 -0.1454 -1.4144 -1.5734 22 1 -1.2700 -3.4840 -2.2107 23 1 -0.4480 -5.6539 -1.3966 24 1 1.5167 -5.7734 0.0729 25 1 4.5147 -3.8955 -0.5256 26 1 4.5949 -4.6682 3.3640 27 1 4.7429 -2.8842 3.3039 28 1 2.5085 -2.7109 2.7406 29 1 2.3579 -4.4973 2.8085 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214412629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:17 Heat of formation + Delta-G solvation = 41.770098 kcal Electronic energy + Delta-G solvation = -14064.736882 eV Core-core repulsion = 11759.255017 eV Total energy + Delta-G solvation = -2305.481865 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07108 -38.99964 -35.62260 -33.93592 -31.51635 -30.75977 -29.68094 -27.10536 -23.74852 -22.88949 -22.38187 -21.00260 -19.27686 -18.25238 -17.14110 -16.65562 -16.04675 -15.26698 -15.19307 -14.85542 -14.42162 -14.01682 -13.49839 -13.20491 -13.04424 -12.95089 -12.83387 -12.65053 -12.40269 -12.15806 -11.59667 -11.39911 -11.09501 -10.83078 -9.38148 -9.29392 -8.76682 -8.57155 -6.37969 0.85905 1.03725 1.34274 1.43393 1.50209 1.75619 2.15121 2.57866 2.69537 3.61166 3.73115 3.95979 4.21025 4.44950 4.55489 4.59231 4.67430 4.84474 5.02856 5.10325 5.17296 5.26510 5.39580 5.51193 5.71797 5.90176 6.03156 6.15952 6.32179 6.55836 6.85288 6.87663 7.13437 7.31868 8.24277 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.014318 C = 0.009308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.625888 B = 1955.078981 C = 3007.384156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.041 3.959 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.473 4.473 8 H 0.066 0.934 9 C 0.090 3.910 10 C -0.181 4.181 11 C -0.101 4.101 12 C -0.233 4.233 13 C -0.081 4.081 14 C -0.001 4.001 15 N -0.564 5.564 16 C 0.358 3.642 17 N -0.624 5.624 18 C 0.031 3.969 19 C 0.079 3.921 20 H 0.290 0.710 21 H 0.104 0.896 22 H 0.114 0.886 23 H 0.123 0.877 24 H 0.111 0.889 25 H 0.189 0.811 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -2.752 0.747 3.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.502 4.502 8 H 0.084 0.916 9 C 0.086 3.914 10 C -0.201 4.201 11 C -0.119 4.119 12 C -0.252 4.252 13 C -0.100 4.100 14 C -0.094 4.094 15 N -0.279 5.279 16 C 0.062 3.938 17 N -0.354 5.354 18 C -0.099 4.099 19 C -0.044 4.044 20 H 0.101 0.899 21 H 0.122 0.878 22 H 0.132 0.868 23 H 0.141 0.859 24 H 0.129 0.871 25 H 0.206 0.794 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.287 -2.654 0.999 3.643 hybrid contribution -0.797 1.016 0.152 1.301 sum 1.489 -1.637 1.151 2.495 Atomic orbital electron populations 1.69859 1.08681 1.30760 1.34688 1.26640 0.95412 1.04133 0.91387 0.85404 0.78985 0.76470 0.79853 1.18484 1.18810 1.19233 1.19484 0.97807 0.92157 1.40736 0.91581 1.18117 0.91696 0.92409 0.89197 1.21022 0.99728 0.97603 1.01713 1.20790 0.98923 0.92895 0.99294 1.20626 1.00762 0.97132 1.06729 1.21000 0.95472 0.96179 0.97398 1.17298 0.95326 0.92965 1.03822 1.44725 1.04032 1.74473 1.04657 1.24933 0.81152 0.87555 1.00195 1.74165 1.29234 1.32792 0.99211 1.23023 0.89428 1.02572 0.94838 1.22632 0.99015 1.01061 0.81736 0.89915 0.87802 0.86802 0.85925 0.87069 0.79415 0.88728 0.90349 0.93061 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.90 10.96 21.83 0.24 -40.66 15 2 C 0.04 1.99 5.14 85.25 0.44 2.43 15 3 Si 0.97 37.96 29.59 68.60 2.03 39.99 15 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 5 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 7 C -0.47 -24.53 8.69 23.37 0.20 -24.32 15 8 H 0.07 3.48 7.48 -2.91 -0.02 3.46 15 9 C 0.09 4.58 5.58 -21.18 -0.12 4.46 15 10 C -0.18 -8.95 8.64 22.46 0.19 -8.75 15 11 C -0.10 -4.33 9.97 22.01 0.22 -4.11 15 12 C -0.23 -9.27 10.04 22.41 0.22 -9.05 15 13 C -0.08 -3.33 9.96 22.37 0.22 -3.11 15 14 C 0.00 -0.06 5.78 38.93 0.23 0.16 15 15 N -0.56 -23.48 2.23 -515.54 -1.15 -24.63 15 16 C 0.36 13.79 12.00 180.44 2.16 15.96 15 17 N -0.62 -23.82 11.60 -349.10 -4.05 -27.87 15 18 C 0.03 1.05 8.05 86.71 0.70 1.75 15 19 C 0.08 2.96 7.70 86.64 0.67 3.63 15 20 H 0.29 13.22 8.30 -92.71 -0.77 12.45 15 21 H 0.10 5.40 6.17 -2.91 -0.02 5.38 15 22 H 0.11 4.24 8.06 -2.91 -0.02 4.22 15 23 H 0.12 4.08 8.06 -2.91 -0.02 4.06 15 24 H 0.11 4.08 8.06 -2.91 -0.02 4.06 15 25 H 0.19 6.44 8.06 -2.91 -0.02 6.42 15 26 H 0.09 2.75 8.14 -2.38 -0.02 2.73 15 27 H 0.08 2.54 8.14 -2.38 -0.02 2.52 15 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 Total: -1.00 -55.67 254.00 3.35 -52.32 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.14 Total: 21.82 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 5.14 Total: -20.97 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -4.96 Total: -93.16 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -55.67 3.35 -52.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214412629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.091 kcal (2) G-P(sol) polarization free energy of solvation -55.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds