Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86798 * 119.99576 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99844 * 3 2 1 5 5 H 1.48496 * 109.47358 * 29.99806 * 3 2 1 6 6 H 1.48497 * 109.47017 * 150.00168 * 3 2 1 7 7 C 1.39874 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99735 * 163.04136 * 7 2 1 9 9 C 1.41134 * 120.00300 * 343.03484 * 7 2 1 10 10 C 1.40888 * 120.15913 * 334.55345 * 9 7 2 11 11 C 1.36349 * 119.82965 * 180.27223 * 10 9 7 12 12 C 1.39529 * 120.16614 * 359.52010 * 11 10 9 13 13 N 1.39076 * 119.83736 * 180.21434 * 12 11 10 14 14 C 1.36484 * 125.84506 * 179.97438 * 13 12 11 15 15 N 1.28249 * 114.54424 * 179.81365 * 14 13 12 16 16 C 1.46976 * 110.20687 * 0.45118 * 15 14 13 17 17 C 1.47294 * 125.84405 * 0.24564 * 13 12 11 18 18 C 1.39528 * 120.32416 * 0.45486 * 12 11 10 19 19 C 1.36353 * 120.16626 * 359.80340 * 18 12 11 20 20 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.08087 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.91159 * 179.74877 * 11 10 9 23 23 H 1.07996 * 122.72711 * 359.97438 * 14 13 12 24 24 H 1.08995 * 110.54158 * 241.14665 * 16 15 14 25 25 H 1.08994 * 110.67076 * 118.39861 * 16 15 14 26 26 H 1.08998 * 110.69204 * 298.37216 * 17 13 12 27 27 H 1.08998 * 110.69791 * 61.58715 * 17 13 12 28 28 H 1.08001 * 119.91689 * 179.77116 * 18 12 11 29 29 H 1.07990 * 120.08389 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0465 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0532 -1.2315 -0.2734 9 6 1.3489 -2.4072 0.3556 10 6 0.2184 -2.3690 1.1956 11 6 -0.4103 -3.5289 1.5398 12 6 0.0572 -4.7506 1.0543 13 7 -0.5919 -5.9291 1.4063 14 6 -0.2418 -7.1854 1.0038 15 7 -0.9908 -8.1199 1.4624 16 6 -2.0507 -7.5522 2.3077 17 6 -1.7784 -6.0347 2.2726 18 6 1.1758 -4.7962 0.2216 19 6 1.8179 -3.6449 -0.1270 20 1 -0.4850 0.8400 0.0004 21 1 -0.1463 -1.4238 1.5697 22 1 -1.2745 -3.5015 2.1869 23 1 0.5994 -7.3771 0.3541 24 1 -1.9715 -7.9313 3.3265 25 1 -3.0339 -7.7746 1.8932 26 1 -1.5600 -5.6591 3.2723 27 1 -2.6231 -5.5020 1.8358 28 1 1.5343 -5.7458 -0.1475 29 1 2.6838 -3.6818 -0.7713 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214412792.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 39.001111 kcal Electronic energy + Delta-G solvation = -13593.319733 eV Core-core repulsion = 11287.717796 eV Total energy + Delta-G solvation = -2305.601937 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33672 -39.12324 -35.77015 -33.71921 -31.79734 -30.81803 -30.20983 -26.75187 -23.96950 -23.52335 -21.82397 -20.99971 -19.20658 -18.64217 -17.00290 -16.92216 -15.85429 -15.69486 -15.04341 -14.55355 -14.17438 -14.09107 -13.96650 -13.53370 -13.20224 -12.99024 -12.81844 -12.77219 -12.43221 -12.17597 -11.69047 -11.29372 -11.03147 -10.88105 -9.96434 -9.52083 -8.64511 -8.32682 -6.16718 0.79961 1.08668 1.40107 1.43142 1.54471 1.82689 2.23050 2.26443 2.77792 3.55532 3.73752 3.78987 4.15141 4.21931 4.37900 4.45672 4.58175 4.83924 4.93141 4.94372 5.05512 5.16682 5.32105 5.47532 5.68232 5.75057 6.07215 6.08715 6.31245 6.61279 6.81652 6.96926 6.98862 7.11067 8.37126 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.074652 B = 0.006554 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.982026 B = 4270.992849 C = 4564.168670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.059 3.941 10 C -0.157 4.157 11 C -0.137 4.137 12 C 0.058 3.942 13 N -0.571 5.571 14 C 0.343 3.657 15 N -0.609 5.609 16 C 0.025 3.975 17 C 0.069 3.931 18 C -0.125 4.125 19 C -0.205 4.205 20 H 0.286 0.714 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.203 0.797 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -5.129 2.748 5.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.057 3.943 10 C -0.177 4.177 11 C -0.158 4.158 12 C -0.036 4.036 13 N -0.282 5.282 14 C 0.047 3.953 15 N -0.336 5.336 16 C -0.104 4.104 17 C -0.054 4.054 18 C -0.146 4.146 19 C -0.225 4.225 20 H 0.097 0.903 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.220 0.780 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.783 -5.916 2.794 6.781 hybrid contribution 0.063 1.808 0.071 1.811 sum -1.720 -4.108 2.865 5.295 Atomic orbital electron populations 1.69892 1.08888 1.30354 1.36637 1.26692 0.95460 1.04374 0.91454 0.85249 0.79130 0.76230 0.79390 1.18842 1.19342 1.18317 1.19740 0.98061 0.92370 1.42526 0.90524 1.17950 0.92551 0.93310 0.90534 1.20867 0.99490 0.96551 1.00814 1.20248 1.00954 0.91542 1.03052 1.17180 0.97286 0.84203 1.04913 1.45414 1.29504 1.04479 1.48827 1.25027 0.96798 0.80493 0.92999 1.74214 1.10562 1.28387 1.20411 1.23154 0.97668 0.89757 0.99853 1.22794 0.88144 0.99271 0.95222 1.20241 0.95755 0.98431 1.00184 1.20817 1.03689 0.92465 1.05556 0.90319 0.87802 0.87601 0.78023 0.88669 0.88815 0.90356 0.90731 0.85320 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.88 10.96 21.82 0.24 -42.64 15 2 C 0.03 1.69 5.15 85.23 0.44 2.13 15 3 Si 0.98 37.62 29.59 68.60 2.03 39.65 15 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 15 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 7 C -0.50 -26.14 9.03 23.38 0.21 -25.93 15 8 H 0.08 3.87 7.90 -2.91 -0.02 3.85 15 9 C 0.06 3.10 5.57 -21.27 -0.12 2.99 15 10 C -0.16 -8.02 8.63 22.48 0.19 -7.83 15 11 C -0.14 -6.13 9.43 22.14 0.21 -5.92 15 12 C 0.06 2.39 6.66 38.62 0.26 2.65 15 13 N -0.57 -19.73 3.21 -516.57 -1.66 -21.39 15 14 C 0.34 10.60 11.58 180.44 2.09 12.69 15 15 N -0.61 -18.97 11.60 -349.11 -4.05 -23.02 15 16 C 0.03 0.66 8.05 86.70 0.70 1.36 15 17 C 0.07 2.02 6.54 86.64 0.57 2.58 15 18 C -0.13 -5.08 9.38 22.14 0.21 -4.88 15 19 C -0.21 -9.49 9.74 22.48 0.22 -9.27 15 20 H 0.29 13.40 8.30 -92.71 -0.77 12.63 15 21 H 0.10 5.58 6.19 -2.91 -0.02 5.57 15 22 H 0.11 4.28 7.29 -2.91 -0.02 4.26 15 23 H 0.20 5.14 6.75 -2.91 -0.02 5.12 15 24 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.13 4.22 6.56 -2.91 -0.02 4.20 15 29 H 0.11 4.66 8.06 -2.92 -0.02 4.64 15 Total: -1.00 -57.97 250.04 2.68 -55.29 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.15 Total: 21.54 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.97 Total: -29.43 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -5.47 Total: -87.05 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -57.97 2.68 -55.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214412792.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.295 kcal (2) G-P(sol) polarization free energy of solvation -57.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds