Wall clock time and date at job start Mon Mar 30 2020 02:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47744 * 270.00733 * 3 2 1 5 5 H 1.48501 * 109.46760 * 30.00446 * 3 2 1 6 6 H 1.48499 * 109.47163 * 150.00185 * 3 2 1 7 7 C 1.37879 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99778 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00084 * 179.97438 * 7 2 1 10 10 H 1.09010 * 107.66711 * 63.80284 * 9 7 2 11 11 N 1.47013 * 107.88819 * 307.60639 * 9 7 2 12 12 N 1.23037 * 121.76916 * 238.03187 * 11 9 7 13 13 C 1.34194 * 125.05981 * 359.97438 * 12 11 9 14 14 O 1.21470 * 119.53419 * 180.02562 * 13 12 11 15 15 C 1.47463 * 120.93262 * 0.02562 * 13 12 11 16 16 C 1.39235 * 122.24258 * 180.02562 * 15 13 12 17 17 C 1.38111 * 119.37924 * 179.97438 * 16 15 13 18 18 C 1.38439 * 120.47637 * 359.97438 * 17 16 15 19 19 C 1.38732 * 120.41784 * 0.02562 * 18 17 16 20 20 C 1.37055 * 119.55079 * 359.97438 * 19 18 17 21 21 H 0.96992 * 120.00500 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.30942 * 359.95655 * 16 15 13 23 23 H 1.08003 * 119.76535 * 179.97438 * 17 16 15 24 24 H 1.07997 * 119.78997 * 179.97438 * 18 17 16 25 25 H 1.07996 * 120.22800 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8427 -0.7357 0.9309 11 7 3.9627 -0.3400 -1.1095 12 7 4.6883 -0.7704 -2.0050 13 6 5.1481 -2.0285 -2.0868 14 8 5.8611 -2.3461 -3.0176 15 6 4.8001 -3.0308 -1.0628 16 6 5.2622 -4.3430 -1.1204 17 6 4.8998 -5.2332 -0.1286 18 6 4.0853 -4.8282 0.9150 19 6 3.6216 -3.5222 0.9780 20 6 3.9757 -2.6312 -0.0013 21 1 -0.4850 0.8399 0.0004 22 1 5.8979 -4.6618 -1.9333 23 1 5.2543 -6.2526 -0.1674 24 1 3.8084 -5.5336 1.6844 25 1 2.9867 -3.2094 1.7938 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214670808.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:56 Heat of formation + Delta-G solvation = 42.068498 kcal Electronic energy + Delta-G solvation = -13788.026430 eV Core-core repulsion = 11346.724411 eV Total energy + Delta-G solvation = -2441.302020 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71663 -38.04272 -37.45301 -33.56404 -31.74303 -30.90268 -29.20896 -25.87151 -23.64851 -23.32704 -21.25272 -18.36756 -18.22723 -16.82585 -16.30525 -15.30368 -15.08523 -14.57796 -14.28857 -13.88168 -13.39259 -12.84926 -12.48940 -12.24554 -12.03528 -11.54288 -11.28349 -11.03239 -10.82074 -10.30010 -10.06227 -9.79901 -9.02684 -8.80196 -8.48638 -8.41771 -6.47211 -4.62108 0.45984 1.48139 1.63646 3.28556 3.34073 3.45337 3.47229 3.98743 4.10761 4.23165 4.64205 4.85066 5.02418 5.09529 5.17127 5.40847 5.49829 5.78160 5.87697 6.20718 6.27930 6.47269 6.57510 6.68282 6.93662 7.09534 7.65380 7.96245 8.45042 8.98506 9.10978 10.59567 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.012532 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.458173 B = 2233.791371 C = 2861.990380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.093 0.907 9 C 0.085 3.915 10 H 0.103 0.897 11 N -0.034 5.034 12 N -0.271 5.271 13 C 0.491 3.509 14 O -0.448 6.448 15 C -0.210 4.210 16 C -0.049 4.049 17 C -0.150 4.150 18 C -0.083 4.083 19 C -0.107 4.107 20 C -0.012 4.012 21 H 0.276 0.724 22 H 0.131 0.869 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -6.079 3.528 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.122 4.122 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.111 0.889 9 C -0.023 4.023 10 H 0.120 0.880 11 N 0.056 4.944 12 N -0.174 5.174 13 C 0.279 3.721 14 O -0.316 6.316 15 C -0.216 4.216 16 C -0.068 4.068 17 C -0.168 4.168 18 C -0.101 4.101 19 C -0.126 4.126 20 C -0.014 4.014 21 H 0.086 0.914 22 H 0.149 0.851 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.213 -5.323 2.476 9.300 hybrid contribution 0.165 -0.531 0.560 0.790 sum 7.378 -5.854 3.037 9.896 Atomic orbital electron populations 1.69846 1.06632 1.28605 1.44963 1.25131 0.95056 1.00177 0.91877 0.86289 0.79039 0.81165 0.79956 1.18758 1.22473 1.18971 1.20617 0.83347 0.96140 1.55182 0.88904 1.20924 1.00124 0.87322 0.93970 0.88022 1.76367 0.90743 1.30146 0.97129 1.71929 1.08731 1.15550 1.21149 1.21184 0.79556 0.86521 0.84868 1.90569 1.29641 1.79985 1.31356 1.20790 1.04561 0.96876 0.99338 1.21094 0.96527 0.91480 0.97653 1.21093 1.00638 0.99620 0.95435 1.21488 0.95375 0.95841 0.97436 1.20788 0.99862 0.92457 0.99480 1.20438 0.91626 0.96608 0.92742 0.91443 0.85128 0.85694 0.85495 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.10 13.96 55.43 0.77 -23.32 15 2 C 0.09 2.29 5.46 -17.82 -0.10 2.19 15 3 Si 0.91 20.96 25.51 -169.99 -4.34 16.62 15 4 H -0.26 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.30 -6.75 7.11 56.52 0.40 -6.34 15 6 H -0.26 -5.77 6.60 56.52 0.37 -5.40 15 7 C -0.51 -13.02 9.01 -34.44 -0.31 -13.33 15 8 H 0.09 2.54 7.73 -52.49 -0.41 2.13 15 9 C 0.08 1.89 2.73 -69.80 -0.19 1.70 15 10 H 0.10 2.14 7.40 -51.92 -0.38 1.76 15 11 N -0.03 -0.78 8.15 -6.45 -0.05 -0.83 15 12 N -0.27 -6.21 11.26 30.31 0.34 -5.87 15 13 C 0.49 10.74 7.94 -12.76 -0.10 10.64 15 14 O -0.45 -10.08 17.34 5.39 0.09 -9.98 15 15 C -0.21 -4.16 5.88 -105.03 -0.62 -4.78 15 16 C -0.05 -0.80 9.67 -39.26 -0.38 -1.18 15 17 C -0.15 -2.06 10.02 -39.55 -0.40 -2.46 15 18 C -0.08 -1.15 10.05 -39.32 -0.40 -1.55 15 19 C -0.11 -1.81 9.25 -39.83 -0.37 -2.18 15 20 C -0.01 -0.24 5.25 -104.15 -0.55 -0.79 15 21 H 0.28 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.13 1.97 7.79 -52.48 -0.41 1.56 15 23 H 0.13 1.30 8.06 -52.48 -0.42 0.88 15 24 H 0.13 1.33 8.06 -52.49 -0.42 0.90 15 25 H 0.14 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 227.70 15.07 3.43 3.43 Total: -1.00 -28.57 227.70 -4.78 -33.36 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -1.63 Total: -1.67 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -3.40 Total: -11.74 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 1.06 Total: -30.03 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.34 Total: 16.62 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.57 -4.78 -33.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214670808.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.425 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds