Wall clock time and date at job start Mon Mar 30 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86805 * 119.99847 * 2 1 4 4 H 1.48501 * 109.46690 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47172 * 299.99563 * 3 2 1 6 6 H 1.48501 * 109.47272 * 60.00040 * 3 2 1 7 7 C 1.38860 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 170.37729 * 7 2 1 9 9 N 1.37205 * 119.99779 * 350.37791 * 7 2 1 10 10 C 1.37008 * 125.09139 * 332.13289 * 9 7 2 11 11 C 1.34303 * 109.92788 * 180.17244 * 10 9 7 12 12 C 1.46663 * 107.05131 * 359.59856 * 11 10 9 13 13 C 1.39513 * 133.96858 * 180.26562 * 12 11 10 14 14 C 1.37781 * 119.65990 * 179.97438 * 13 12 11 15 15 C 1.38749 * 120.35978 * 359.97438 * 14 13 12 16 16 C 1.37895 * 120.64968 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.03978 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47348 * 259.99264 * 17 16 15 19 19 C 1.38107 * 125.09071 * 151.85754 * 9 7 2 20 20 H 0.97002 * 120.00026 * 0.02562 * 1 2 3 21 21 H 1.07993 * 125.03755 * 0.02562 * 10 9 7 22 22 H 1.08002 * 126.47315 * 179.87374 * 11 10 9 23 23 H 1.08008 * 120.16966 * 359.95228 * 13 12 11 24 24 H 1.07993 * 119.82110 * 179.97438 * 14 13 12 25 25 H 1.08004 * 119.67758 * 180.02562 * 15 14 13 26 26 H 1.08996 * 109.47262 * 19.99387 * 17 16 15 27 27 H 1.09010 * 109.46966 * 139.99206 * 17 16 15 28 28 H 1.00896 * 111.00261 * 56.04747 * 18 17 16 29 29 H 1.00902 * 111.00463 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0087 -1.2026 0.0005 8 1 3.0773 -1.2092 -0.1558 9 7 1.3371 -2.3823 0.1997 10 6 0.1752 -2.5165 0.9132 11 6 -0.2140 -3.8019 0.9167 12 6 0.7737 -4.5524 0.1343 13 6 0.9117 -5.8949 -0.2192 14 6 1.9849 -6.2908 -0.9873 15 6 2.9256 -5.3624 -1.4096 16 6 2.8027 -4.0321 -1.0682 17 6 3.8320 -3.0352 -1.5348 18 7 4.7754 -2.7581 -0.4433 19 6 1.7282 -3.6116 -0.2936 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3487 -1.7088 1.4025 22 1 -1.0912 -4.2058 1.4003 23 1 0.1813 -6.6202 0.1078 24 1 2.0946 -7.3294 -1.2621 25 1 3.7623 -5.6848 -2.0116 26 1 4.3734 -3.4443 -2.3878 27 1 3.3352 -2.1107 -1.8292 28 1 5.2016 -3.6093 -0.1089 29 1 5.4760 -2.0915 -0.7313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229696847.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:26 Heat of formation + Delta-G solvation = 56.668844 kcal Electronic energy + Delta-G solvation = -14210.889491 eV Core-core repulsion = 11906.053684 eV Total energy + Delta-G solvation = -2304.835807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00137 -36.28215 -34.38045 -32.79187 -30.41583 -28.66010 -27.63952 -25.03048 -23.64064 -20.78000 -20.47947 -19.38879 -17.40005 -15.69764 -15.29242 -14.65740 -14.57159 -14.24848 -13.97986 -13.30195 -12.96982 -12.56611 -12.02055 -11.68446 -11.58117 -11.34885 -11.20050 -10.73855 -10.51610 -10.43269 -10.01974 -9.74379 -9.11345 -8.41781 -8.10166 -6.97437 -6.77638 -6.45585 -4.16364 2.17999 2.72498 3.05931 3.10258 3.16115 3.90797 4.14222 4.83552 4.95603 5.05266 5.35655 5.67114 5.72140 5.90862 6.04432 6.27526 6.42950 6.55244 6.60829 7.07287 7.10480 7.17383 7.20660 7.31827 7.49520 7.61384 7.70943 7.80206 7.97135 8.13918 8.24880 8.62133 9.13686 9.58525 10.43182 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.012269 C = 0.009291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.196300 B = 2281.625405 C = 3013.018961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.036 3.964 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.336 4.336 8 H 0.130 0.870 9 N -0.282 5.282 10 C 0.088 3.912 11 C -0.285 4.285 12 C -0.123 4.123 13 C -0.082 4.082 14 C -0.176 4.176 15 C -0.136 4.136 16 C -0.076 4.076 17 C 0.105 3.895 18 N -0.836 5.836 19 C 0.078 3.922 20 H 0.275 0.725 21 H 0.161 0.839 22 H 0.122 0.878 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.018 0.982 27 H 0.089 0.911 28 H 0.334 0.666 29 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 -3.461 -1.301 6.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.147 0.853 9 N 0.056 4.944 10 C -0.047 4.047 11 C -0.309 4.309 12 C -0.129 4.129 13 C -0.101 4.101 14 C -0.195 4.195 15 C -0.156 4.156 16 C -0.079 4.079 17 C -0.025 4.025 18 N -0.365 5.365 19 C -0.034 4.034 20 H 0.085 0.915 21 H 0.178 0.822 22 H 0.140 0.860 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.036 0.964 27 H 0.107 0.893 28 H 0.146 0.854 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.391 -2.647 -0.960 5.216 hybrid contribution 0.849 0.429 -0.686 1.173 sum 5.240 -2.218 -1.646 5.923 Atomic orbital electron populations 1.69935 1.06245 1.28395 1.44675 1.25596 0.95655 1.00540 0.95310 0.85746 0.79919 0.80309 0.78125 1.18646 1.20437 1.20162 1.20466 0.94733 0.81427 1.49778 0.85265 1.40148 1.17302 1.04488 1.32489 1.21854 0.89927 0.96378 0.96501 1.21237 1.03182 0.93068 1.13390 1.19056 0.97172 0.92779 1.03917 1.20249 0.97437 0.93780 0.98631 1.20408 0.97206 0.97949 1.03979 1.20310 0.99800 0.91951 1.03582 1.18557 0.95258 0.93456 1.00612 1.20705 0.92365 0.98830 0.90598 1.58633 1.22380 1.16654 1.38838 1.18105 0.97332 0.86743 1.01265 0.91458 0.82189 0.86034 0.87952 0.87966 0.88013 0.96381 0.89267 0.85356 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.81 11.20 55.49 0.62 -22.18 15 2 C 0.04 0.92 5.35 -17.49 -0.09 0.82 15 3 Si 0.93 19.52 29.56 -169.99 -5.03 14.49 15 4 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.28 -5.73 7.11 56.52 0.40 -5.32 15 7 C -0.34 -8.83 8.60 -14.92 -0.13 -8.96 15 8 H 0.13 3.25 4.95 -52.49 -0.26 2.99 15 9 N -0.28 -7.54 2.90 -59.73 -0.17 -7.71 15 10 C 0.09 2.29 9.82 -16.63 -0.16 2.13 15 11 C -0.28 -6.89 11.09 -37.57 -0.42 -7.31 15 12 C -0.12 -3.00 6.37 -105.10 -0.67 -3.67 15 13 C -0.08 -1.72 10.10 -39.27 -0.40 -2.12 15 14 C -0.18 -3.38 10.03 -39.56 -0.40 -3.77 15 15 C -0.14 -2.65 9.64 -39.52 -0.38 -3.03 15 16 C -0.08 -1.68 5.41 -104.48 -0.56 -2.24 15 17 C 0.10 2.01 5.96 -4.98 -0.03 1.98 15 18 N -0.84 -14.56 8.41 -11.41 -0.10 -14.66 15 19 C 0.08 1.97 6.70 -83.84 -0.56 1.41 15 20 H 0.28 6.78 8.31 -40.82 -0.34 6.44 15 21 H 0.16 4.16 6.76 -52.49 -0.36 3.81 15 22 H 0.12 2.59 8.06 -52.49 -0.42 2.16 15 23 H 0.10 1.87 8.06 -52.48 -0.42 1.45 15 24 H 0.10 1.64 8.06 -52.49 -0.42 1.21 15 25 H 0.10 1.68 8.03 -52.48 -0.42 1.26 15 26 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 15 27 H 0.09 1.91 6.33 -51.92 -0.33 1.59 15 28 H 0.33 5.30 8.99 -39.29 -0.35 4.94 15 29 H 0.33 4.87 9.08 -39.29 -0.36 4.52 15 LS Contribution 247.05 15.07 3.72 3.72 Total: -1.00 -28.82 247.05 -7.64 -36.47 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -2.89 Total: 14.62 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.80 Total: -24.75 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.35 Total: -44.55 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.82 -7.64 -36.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696847.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.138 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds