Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47475 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47176 * 299.99919 * 3 2 1 6 6 H 1.48506 * 109.47139 * 59.99975 * 3 2 1 7 7 C 1.38852 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00554 * 190.70222 * 7 2 1 9 9 N 1.37210 * 119.99647 * 10.98270 * 7 2 1 10 10 C 1.37000 * 125.09412 * 20.81932 * 9 7 2 11 11 C 1.34301 * 109.93334 * 179.81324 * 10 9 7 12 12 C 1.46662 * 107.04840 * 0.43699 * 11 10 9 13 13 C 1.39519 * 133.96223 * 179.73172 * 12 11 10 14 14 C 1.37782 * 119.65258 * 179.97438 * 13 12 11 15 15 C 1.50693 * 119.81807 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47126 * 90.00235 * 15 14 13 17 17 C 1.38749 * 120.36139 * 0.02562 * 14 13 12 18 18 C 1.37894 * 120.65172 * 359.97438 * 17 14 13 19 19 C 1.38114 * 125.09291 * 201.12231 * 9 7 2 20 20 H 0.96999 * 120.00176 * 0.02562 * 1 2 3 21 21 H 1.08008 * 125.02860 * 0.02562 * 10 9 7 22 22 H 1.08008 * 126.47130 * 180.16564 * 11 10 9 23 23 H 1.07999 * 120.17475 * 0.02608 * 13 12 11 24 24 H 1.09001 * 109.47092 * 210.00196 * 15 14 13 25 25 H 1.09002 * 109.47322 * 330.00457 * 15 14 13 26 26 H 1.00898 * 110.99757 * 56.04951 * 16 15 14 27 27 H 1.00903 * 110.99784 * 179.97438 * 16 15 14 28 28 H 1.08007 * 119.67242 * 179.97438 * 17 14 13 29 29 H 1.08006 * 120.04504 * 180.02562 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0087 -1.2024 0.0005 8 1 3.0746 -1.2105 0.1742 9 7 1.3416 -2.3799 -0.2253 10 6 0.1252 -2.4895 -0.8461 11 6 -0.2421 -3.7797 -0.9093 12 6 0.8206 -4.5612 -0.2680 13 6 1.0097 -5.9218 -0.0245 14 6 2.1511 -6.3468 0.6198 15 6 2.3589 -7.8155 0.8853 16 7 3.0672 -8.4228 -0.2494 17 6 3.1097 -5.4297 1.0263 18 6 2.9368 -4.0818 0.7926 19 6 1.7929 -3.6318 0.1444 20 1 -0.4850 0.8400 -0.0004 21 1 -0.4512 -1.6611 -1.2311 22 1 -1.1506 -4.1680 -1.3455 23 1 0.2658 -6.6383 -0.3400 24 1 2.9507 -7.9406 1.7920 25 1 1.3919 -8.3022 1.0124 26 1 3.9386 -7.9466 -0.4284 27 1 3.2191 -9.4084 -0.0952 28 1 4.0000 -5.7751 1.5308 29 1 3.6894 -3.3765 1.1129 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229717242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = 51.410492 kcal Electronic energy + Delta-G solvation = -13694.322212 eV Core-core repulsion = 11389.258386 eV Total energy + Delta-G solvation = -2305.063826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97340 -36.83840 -33.90930 -32.84728 -30.88823 -28.77590 -27.73697 -25.15244 -23.53401 -21.48033 -19.96900 -19.46312 -17.55636 -15.84963 -15.58572 -15.01738 -14.59503 -14.37959 -13.41434 -13.36158 -13.21304 -12.87011 -12.23126 -11.86861 -11.67619 -11.40501 -11.21912 -10.84013 -10.60459 -10.52374 -10.29131 -9.76463 -9.21531 -8.53718 -8.46091 -7.02758 -6.86363 -6.54768 -4.28492 2.23383 2.59439 2.99359 3.03159 3.08564 3.81028 4.08301 4.70733 4.87078 4.95940 5.19403 5.48988 5.56463 5.88706 5.98422 6.03969 6.43833 6.47024 6.53718 6.92952 7.08868 7.11236 7.15772 7.19028 7.33172 7.47375 7.61724 7.67771 7.69599 8.04063 8.20830 8.47797 9.02012 9.45307 10.29080 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.055183 B = 0.007596 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.276273 B = 3685.138367 C = 4081.428540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.339 4.339 8 H 0.105 0.895 9 N -0.292 5.292 10 C 0.085 3.915 11 C -0.282 4.282 12 C -0.120 4.120 13 C -0.056 4.056 14 C -0.146 4.146 15 C 0.117 3.883 16 N -0.847 5.847 17 C -0.130 4.130 18 C -0.109 4.109 19 C 0.054 3.946 20 H 0.278 0.722 21 H 0.171 0.829 22 H 0.124 0.876 23 H 0.104 0.896 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.340 0.660 27 H 0.331 0.669 28 H 0.102 0.898 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -6.492 0.793 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.167 4.167 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.123 0.877 9 N 0.045 4.955 10 C -0.050 4.050 11 C -0.307 4.307 12 C -0.126 4.126 13 C -0.075 4.075 14 C -0.148 4.148 15 C -0.013 4.013 16 N -0.376 5.376 17 C -0.151 4.151 18 C -0.129 4.129 19 C -0.057 4.057 20 H 0.089 0.911 21 H 0.187 0.813 22 H 0.142 0.858 23 H 0.122 0.878 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.038 -5.762 0.430 6.528 hybrid contribution 1.025 0.711 0.792 1.478 sum 4.064 -5.051 1.222 6.597 Atomic orbital electron populations 1.69902 1.06245 1.28682 1.43738 1.25495 0.95728 1.00510 0.94963 0.85666 0.79629 0.79907 0.78385 1.18837 1.19890 1.20090 1.19874 0.93916 0.82247 1.50663 0.87726 1.40251 1.14574 1.03429 1.37285 1.22101 0.88361 0.97035 0.97453 1.21300 1.01237 0.92440 1.15679 1.19040 0.96141 0.92409 1.04968 1.20067 0.96425 0.93172 0.97855 1.19032 0.96686 0.93279 1.05829 1.20492 0.98001 0.92308 0.90476 1.58778 1.28545 1.06378 1.43896 1.20238 0.98702 0.92144 1.03979 1.19801 0.96257 0.94943 1.01918 1.18389 0.97315 0.85878 1.04157 0.91103 0.81252 0.85850 0.87780 0.95849 0.91271 0.84745 0.85694 0.88021 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.23 10.84 55.49 0.60 -21.63 15 2 C 0.04 1.03 5.35 -17.49 -0.09 0.94 15 3 Si 0.94 19.15 29.56 -169.99 -5.03 14.12 15 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 7 C -0.34 -9.01 9.93 -14.92 -0.15 -9.16 15 8 H 0.11 2.65 7.85 -52.49 -0.41 2.24 15 9 N -0.29 -7.88 2.92 -59.73 -0.17 -8.06 15 10 C 0.08 2.20 9.89 -16.63 -0.16 2.04 15 11 C -0.28 -6.82 11.09 -37.57 -0.42 -7.24 15 12 C -0.12 -2.90 6.37 -105.10 -0.67 -3.57 15 13 C -0.06 -1.18 9.74 -39.27 -0.38 -1.56 15 14 C -0.15 -2.78 5.39 -104.60 -0.56 -3.34 15 15 C 0.12 1.74 6.90 -4.98 -0.03 1.71 15 16 N -0.85 -11.40 9.61 -11.41 -0.11 -11.51 15 17 C -0.13 -2.53 9.67 -39.52 -0.38 -2.91 15 18 C -0.11 -2.43 9.95 -39.44 -0.39 -2.83 15 19 C 0.05 1.38 6.75 -83.84 -0.57 0.82 15 20 H 0.28 6.67 8.31 -40.82 -0.34 6.33 15 21 H 0.17 4.39 6.33 -52.48 -0.33 4.06 15 22 H 0.12 2.62 8.06 -52.48 -0.42 2.20 15 23 H 0.10 2.00 8.06 -52.49 -0.42 1.58 15 24 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 15 25 H 0.07 0.99 8.08 -51.93 -0.42 0.57 15 26 H 0.34 4.43 8.98 -39.29 -0.35 4.08 15 27 H 0.33 3.47 9.08 -39.29 -0.36 3.11 15 28 H 0.10 1.66 8.06 -52.48 -0.42 1.24 15 29 H 0.10 2.21 8.06 -52.48 -0.42 1.78 15 LS Contribution 254.23 15.07 3.83 3.83 Total: -1.00 -28.57 254.23 -7.81 -36.38 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -3.12 Total: 11.96 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.81 Total: -25.10 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.32 Total: -41.20 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.57 -7.81 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229717242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.791 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds