Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 119.99949 * 2 1 4 4 H 1.48500 * 109.47475 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47176 * 299.99919 * 3 2 1 6 6 H 1.48506 * 109.47139 * 59.99975 * 3 2 1 7 7 C 1.38852 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00554 * 190.70222 * 7 2 1 9 9 N 1.37210 * 119.99647 * 10.98270 * 7 2 1 10 10 C 1.37000 * 125.09412 * 20.81932 * 9 7 2 11 11 C 1.34301 * 109.93334 * 179.81324 * 10 9 7 12 12 C 1.46662 * 107.04840 * 0.43699 * 11 10 9 13 13 C 1.39519 * 133.96223 * 179.73172 * 12 11 10 14 14 C 1.37782 * 119.65258 * 179.97438 * 13 12 11 15 15 C 1.50693 * 119.81807 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47126 * 90.00235 * 15 14 13 17 17 C 1.38749 * 120.36139 * 0.02562 * 14 13 12 18 18 C 1.37894 * 120.65172 * 359.97438 * 17 14 13 19 19 C 1.38114 * 125.09291 * 201.12231 * 9 7 2 20 20 H 0.96999 * 120.00176 * 0.02562 * 1 2 3 21 21 H 1.08008 * 125.02860 * 0.02562 * 10 9 7 22 22 H 1.08008 * 126.47130 * 180.16564 * 11 10 9 23 23 H 1.07999 * 120.17475 * 0.02608 * 13 12 11 24 24 H 1.09001 * 109.47092 * 210.00196 * 15 14 13 25 25 H 1.09002 * 109.47322 * 330.00457 * 15 14 13 26 26 H 1.00898 * 110.99757 * 56.04951 * 16 15 14 27 27 H 1.00903 * 110.99784 * 179.97438 * 16 15 14 28 28 H 1.08007 * 119.67242 * 179.97438 * 17 14 13 29 29 H 1.08006 * 120.04504 * 180.02562 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0087 -1.2024 0.0005 8 1 3.0746 -1.2105 0.1742 9 7 1.3416 -2.3799 -0.2253 10 6 0.1252 -2.4895 -0.8461 11 6 -0.2421 -3.7797 -0.9093 12 6 0.8206 -4.5612 -0.2680 13 6 1.0097 -5.9218 -0.0245 14 6 2.1511 -6.3468 0.6198 15 6 2.3589 -7.8155 0.8853 16 7 3.0672 -8.4228 -0.2494 17 6 3.1097 -5.4297 1.0263 18 6 2.9368 -4.0818 0.7926 19 6 1.7929 -3.6318 0.1444 20 1 -0.4850 0.8400 -0.0004 21 1 -0.4512 -1.6611 -1.2311 22 1 -1.1506 -4.1680 -1.3455 23 1 0.2658 -6.6383 -0.3400 24 1 2.9507 -7.9406 1.7920 25 1 1.3919 -8.3022 1.0124 26 1 3.9386 -7.9466 -0.4284 27 1 3.2191 -9.4084 -0.0952 28 1 4.0000 -5.7751 1.5308 29 1 3.6894 -3.3765 1.1129 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229717242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = 33.869792 kcal Electronic energy + Delta-G solvation = -13695.082833 eV Core-core repulsion = 11389.258386 eV Total energy + Delta-G solvation = -2305.824448 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.77929 -38.43228 -35.47735 -34.45335 -32.69563 -30.41609 -29.46182 -26.95277 -25.01333 -23.17975 -21.79872 -21.14837 -19.39170 -17.56876 -17.00885 -16.69383 -16.28014 -15.64235 -15.17708 -14.90323 -14.74261 -14.58009 -13.90380 -13.59545 -13.28901 -13.04631 -12.85047 -12.65745 -12.16644 -12.14788 -11.98333 -11.43884 -11.05437 -10.33321 -9.50296 -8.80118 -8.72813 -8.39709 -6.25328 0.50375 0.92712 1.34835 1.38893 1.51575 2.09453 2.21880 2.90401 3.05015 3.25265 4.00373 4.05841 4.18935 4.33640 4.55805 4.64491 4.75410 4.81388 4.89331 5.06669 5.30008 5.36195 5.38250 5.43287 5.75107 5.77633 5.96640 6.28974 6.35335 6.43313 6.55737 6.75873 7.12822 7.55188 8.42306 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.055183 B = 0.007596 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.276273 B = 3685.138367 C = 4081.428540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.001 4.001 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.374 4.374 8 H 0.105 0.895 9 N -0.315 5.315 10 C 0.056 3.944 11 C -0.285 4.285 12 C -0.143 4.143 13 C -0.067 4.067 14 C -0.134 4.134 15 C 0.121 3.879 16 N -0.855 5.855 17 C -0.113 4.113 18 C -0.133 4.133 19 C 0.020 3.980 20 H 0.284 0.716 21 H 0.159 0.841 22 H 0.146 0.854 23 H 0.123 0.877 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.344 0.656 27 H 0.352 0.648 28 H 0.141 0.859 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -8.022 1.434 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.206 4.206 3 Si 0.834 3.166 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.501 4.501 8 H 0.122 0.878 9 N 0.021 4.979 10 C -0.078 4.078 11 C -0.310 4.310 12 C -0.149 4.149 13 C -0.086 4.086 14 C -0.136 4.136 15 C -0.009 4.009 16 N -0.386 5.386 17 C -0.133 4.133 18 C -0.153 4.153 19 C -0.091 4.091 20 H 0.094 0.906 21 H 0.176 0.824 22 H 0.164 0.836 23 H 0.141 0.859 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.364 -7.334 1.072 8.602 hybrid contribution 0.645 0.974 0.630 1.327 sum 5.009 -6.361 1.702 8.274 Atomic orbital electron populations 1.69998 1.07729 1.29865 1.44173 1.26526 0.96582 1.03675 0.93808 0.84591 0.78425 0.74975 0.78611 1.18091 1.19095 1.19441 1.20207 0.94305 0.83191 1.52374 0.87757 1.40447 1.15037 1.04084 1.38357 1.22115 0.88981 0.97567 0.99108 1.21619 1.02069 0.92002 1.15316 1.19398 0.96022 0.93810 1.05659 1.20387 0.97904 0.92105 0.98192 1.19568 0.95138 0.95846 1.03073 1.20465 0.99353 0.89229 0.91813 1.58669 1.28848 1.07813 1.43312 1.20708 0.99727 0.90809 1.02043 1.20089 0.95839 0.96622 1.02754 1.18987 0.98888 0.85805 1.05424 0.90580 0.82361 0.83616 0.85907 0.93524 0.90322 0.84368 0.83428 0.84113 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.65 10.84 21.65 0.23 -47.42 15 2 C 0.00 -0.07 5.35 84.90 0.45 0.38 15 3 Si 1.01 39.65 29.56 68.60 2.03 41.68 15 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 6 H -0.27 -10.19 7.11 99.48 0.71 -9.49 15 7 C -0.37 -20.61 9.93 84.00 0.83 -19.77 15 8 H 0.10 5.50 7.85 -2.91 -0.02 5.47 15 9 N -0.31 -17.70 2.92 -342.89 -1.00 -18.70 15 10 C 0.06 3.06 9.89 82.99 0.82 3.88 15 11 C -0.29 -14.16 11.09 23.57 0.26 -13.90 15 12 C -0.14 -7.00 6.37 -20.17 -0.13 -7.13 15 13 C -0.07 -2.71 9.74 22.47 0.22 -2.49 15 14 C -0.13 -4.69 5.39 -19.85 -0.11 -4.80 15 15 C 0.12 3.08 6.90 85.55 0.59 3.67 15 16 N -0.85 -19.49 9.61 -190.02 -1.83 -21.32 15 17 C -0.11 -4.07 9.67 22.31 0.22 -3.85 15 18 C -0.13 -5.89 9.95 22.36 0.22 -5.67 15 19 C 0.02 1.03 6.75 38.93 0.26 1.29 15 20 H 0.28 13.97 8.31 -92.71 -0.77 13.20 15 21 H 0.16 8.74 6.33 -2.91 -0.02 8.72 15 22 H 0.15 6.26 8.06 -2.91 -0.02 6.24 15 23 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 24 H 0.05 1.01 8.08 -2.39 -0.02 0.99 15 25 H 0.08 1.89 8.08 -2.39 -0.02 1.87 15 26 H 0.34 7.58 8.98 -89.70 -0.81 6.78 15 27 H 0.35 5.85 9.08 -89.69 -0.81 5.03 15 28 H 0.14 3.95 8.06 -2.91 -0.02 3.93 15 29 H 0.11 4.59 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -63.31 254.23 2.64 -60.67 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.44 Total: 33.48 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 3.65 Total: -48.40 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.59 Total: -87.43 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -63.31 2.64 -60.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229717242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.542 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds