Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 S 1.81396 * 109.46979 * 120.00289 * 2 1 3 13 13 C 1.81402 * 103.00101 * 294.99649 * 12 2 1 14 14 C 1.52996 * 109.47458 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.82033 * 305.56979 * 14 13 12 16 16 C 1.54378 * 109.83313 * 184.59045 * 14 13 12 17 17 C 1.55308 * 102.25202 * 219.13347 * 16 14 13 18 18 C 1.54941 * 100.94084 * 34.13058 * 17 16 14 19 19 O 1.43238 * 109.82781 * 66.45207 * 14 13 12 20 20 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.47347 * 300.00656 * 13 12 2 25 25 H 1.09000 * 109.46771 * 60.00165 * 13 12 2 26 26 H 1.09000 * 110.84670 * 337.31920 * 16 14 13 27 27 H 1.08998 * 110.85047 * 100.93560 * 16 14 13 28 28 H 1.09002 * 111.12060 * 276.20795 * 17 16 14 29 29 H 1.09003 * 111.12094 * 152.04897 * 17 16 14 30 30 H 1.09004 * 110.30609 * 204.63474 * 18 17 16 31 31 H 1.09001 * 110.39442 * 82.51679 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 16 2.1346 -0.8552 1.4811 13 6 1.5665 0.2152 2.8309 14 6 2.0050 -0.3779 4.1713 15 1 1.6569 -1.4077 4.2513 16 6 1.4282 0.4634 5.3301 17 6 2.6049 0.4788 6.3437 18 6 3.8204 0.4919 5.3829 19 8 3.4330 -0.3380 4.2763 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7011 1.1560 -3.4844 24 1 2.0001 1.2084 2.7142 25 1 0.4792 0.2881 2.8037 26 1 1.1911 1.4733 4.9957 27 1 0.5512 -0.0196 5.7611 28 1 2.6024 -0.4188 6.9620 29 1 2.5811 1.3779 6.9595 30 1 4.6984 0.0769 5.8780 31 1 4.0238 1.5069 5.0416 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235434861.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -63.675278 kcal Electronic energy + Delta-G solvation = -12553.865074 eV Core-core repulsion = 10346.961955 eV Total energy + Delta-G solvation = -2206.903119 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.27795 -33.95055 -32.19994 -31.33286 -30.21992 -26.06513 -25.11334 -21.80376 -21.41050 -20.76002 -16.88547 -16.42057 -15.89503 -15.29985 -14.50078 -14.22375 -13.65254 -13.35426 -13.07076 -12.79572 -12.19854 -11.85430 -11.71629 -11.30669 -11.21999 -10.91833 -10.86586 -10.84821 -10.47368 -10.34290 -9.71293 -9.42468 -9.20306 -8.63563 -8.32085 -6.50376 -6.09164 -4.16605 2.78800 3.32047 3.34703 3.39989 3.98091 4.00885 4.40539 4.48068 4.77275 4.89307 5.20370 5.22317 5.25556 5.54334 5.60150 5.68518 5.74168 5.75112 5.92772 6.06325 6.30702 6.67037 6.85779 6.93095 7.21457 7.46415 7.71382 7.91246 8.17734 8.83043 9.46212 10.96812 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.067330 B = 0.006380 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.761223 B = 4387.641499 C = 4600.555150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.108 3.892 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 S -0.295 6.295 13 C -0.101 4.101 14 C 0.101 3.899 15 H 0.085 0.915 16 C -0.149 4.149 17 C -0.156 4.156 18 C 0.046 3.954 19 O -0.362 6.362 20 H 0.039 0.961 21 H 0.008 0.992 22 H 0.091 0.909 23 H 0.264 0.736 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 0.996 14.425 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 H 0.058 0.942 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.200 1.200 12 S -0.066 6.066 13 C -0.249 4.249 14 C 0.042 3.958 15 H 0.103 0.897 16 C -0.188 4.188 17 C -0.193 4.193 18 C -0.030 4.030 19 O -0.281 6.281 20 H 0.058 0.942 21 H 0.027 0.973 22 H 0.110 0.890 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.911 0.063 14.211 14.241 hybrid contribution -0.615 0.962 -0.792 1.390 sum 0.296 1.025 13.419 13.461 Atomic orbital electron populations 1.22047 0.97087 1.00231 1.00336 1.20769 0.94837 0.96789 0.89549 0.94186 1.20667 1.31702 1.12923 0.88785 0.91673 1.24913 0.94857 0.95041 0.98842 1.69870 1.36401 1.22850 1.23900 0.86435 0.79314 0.79684 0.81340 1.20012 1.21152 1.19996 1.86707 1.77137 1.39661 1.03115 1.23637 1.02798 1.01861 0.96626 1.22455 0.81412 0.99402 0.92493 0.89673 1.23209 0.98820 1.01362 0.95389 1.23262 0.95010 1.02862 0.98213 1.23364 0.97227 0.95469 0.86978 1.88605 1.20667 1.68853 1.49948 0.94198 0.97295 0.89031 0.92629 0.90907 0.90146 0.90314 0.89952 0.90471 0.90176 0.90017 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.87 37.16 0.33 -3.05 16 2 C 0.11 2.85 2.76 -27.88 -0.08 2.77 16 3 H 0.04 1.13 8.14 -51.92 -0.42 0.71 16 4 C -0.50 -14.31 8.59 -34.44 -0.30 -14.61 16 5 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.41 11.31 55.43 0.63 -24.78 16 8 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 S -0.29 -6.86 20.90 -107.50 -2.25 -9.11 16 13 C -0.10 -1.83 5.19 37.16 0.19 -1.64 16 14 C 0.10 1.54 3.51 -26.01 -0.09 1.45 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.15 -1.66 6.54 -24.78 -0.16 -1.82 16 17 C -0.16 -1.50 7.16 -24.48 -0.18 -1.68 16 18 C 0.05 0.56 7.78 38.18 0.30 0.86 16 19 O -0.36 -6.07 10.83 -35.23 -0.38 -6.45 16 20 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.01 0.18 6.92 -51.93 -0.36 -0.18 16 22 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 25 H 0.08 1.38 7.14 -51.92 -0.37 1.01 16 26 H 0.08 0.85 7.85 -51.93 -0.41 0.45 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 266.87 15.07 4.02 4.02 Total: -1.00 -30.06 266.87 -7.87 -37.94 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.80 Total: -2.25 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.08 Total: -15.94 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.63 Total: -24.78 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.38 Total: -6.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -2.25 Total: -9.11 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.06 -7.87 -37.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235434861.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.739 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds