Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86802 * 119.99744 * 2 1 4 4 H 1.48505 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46964 * 300.00020 * 3 2 1 6 6 H 1.48502 * 109.47208 * 60.00068 * 3 2 1 7 7 C 1.40217 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99380 * 169.63345 * 7 2 1 9 9 C 1.40759 * 120.00311 * 349.63406 * 7 2 1 10 10 C 1.40764 * 120.34454 * 329.54774 * 9 7 2 11 11 C 1.36464 * 120.00582 * 180.30603 * 10 9 7 12 12 C 1.38925 * 120.73390 * 359.69817 * 11 10 9 13 13 C 1.38065 * 120.70215 * 0.02562 * 12 11 10 14 14 C 1.39399 * 119.95792 * 0.02562 * 13 12 11 15 15 C 1.47252 * 120.35623 * 179.97438 * 14 13 12 16 16 N 1.32369 * 126.70125 * 354.34344 * 15 14 13 17 17 C 1.34071 * 105.54447 * 179.73546 * 16 15 14 18 18 N 1.30121 * 107.67088 * 0.02562 * 17 16 15 19 19 O 1.21282 * 110.53379 * 359.97438 * 18 17 16 20 20 H 0.96997 * 119.99691 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.99495 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.63019 * 179.71761 * 11 10 9 23 23 H 1.08000 * 119.64965 * 180.02562 * 12 11 10 24 24 H 1.08001 * 120.01808 * 179.97438 * 13 12 11 25 25 H 1.07994 * 126.16513 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0079 -1.2143 0.0005 8 1 3.0747 -1.2220 -0.1678 9 6 1.3214 -2.4233 0.2204 10 6 0.1709 -2.4506 1.0311 11 6 -0.4857 -3.6276 1.2447 12 6 -0.0358 -4.8070 0.6645 13 6 1.0860 -4.8135 -0.1403 14 6 1.7797 -3.6278 -0.3772 15 6 2.9774 -3.6247 -1.2337 16 7 3.5750 -4.6812 -1.7619 17 6 4.6095 -4.1957 -2.4630 18 7 4.5998 -2.9008 -2.3359 19 8 3.6739 -2.5489 -1.6361 20 1 -0.4849 0.8400 -0.0004 21 1 -0.1895 -1.5406 1.4878 22 1 -1.3651 -3.6423 1.8714 23 1 -0.5691 -5.7286 0.8450 24 1 1.4263 -5.7368 -0.5854 25 1 5.3229 -4.7750 -3.0302 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236228788.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 80.750782 kcal Electronic energy + Delta-G solvation = -13763.433760 eV Core-core repulsion = 11323.809130 eV Total energy + Delta-G solvation = -2439.624630 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.36679 -37.79146 -34.70796 -33.92987 -32.12615 -29.90952 -29.09058 -25.71036 -23.55682 -22.83855 -20.94329 -20.38481 -17.80214 -16.95203 -16.65797 -15.60181 -14.97778 -14.26942 -14.06067 -13.44436 -12.85864 -12.45063 -12.02241 -11.68432 -11.41079 -11.27578 -11.10850 -10.79576 -10.61381 -10.23944 -9.86268 -9.73083 -9.52870 -9.50592 -7.67556 -7.53430 -7.06590 -4.71516 1.67220 2.60859 2.80071 2.97012 3.05091 3.07457 3.49862 3.76168 3.96639 4.39871 4.71355 5.14910 5.37996 6.05637 6.09666 6.25675 6.38568 6.74268 6.80007 6.83104 6.89776 7.06814 7.27674 7.57740 7.71475 7.81981 7.93450 8.30453 8.48558 8.57709 9.17486 9.83731 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.015108 C = 0.009214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.291367 B = 1852.917887 C = 3037.979580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.430 4.430 8 H 0.095 0.905 9 C 0.139 3.861 10 C -0.147 4.147 11 C -0.088 4.088 12 C -0.240 4.240 13 C -0.028 4.028 14 C -0.182 4.182 15 C 0.283 3.717 16 N -0.539 5.539 17 C 0.137 3.863 18 N -0.429 5.429 19 O 0.077 5.923 20 H 0.288 0.712 21 H 0.125 0.875 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -1.037 0.516 1.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.458 4.458 8 H 0.113 0.887 9 C 0.134 3.866 10 C -0.166 4.166 11 C -0.107 4.107 12 C -0.259 4.259 13 C -0.048 4.048 14 C -0.188 4.188 15 C 0.075 3.925 16 N -0.275 5.275 17 C -0.157 4.157 18 N -0.144 5.144 19 O 0.024 5.976 20 H 0.099 0.901 21 H 0.143 0.857 22 H 0.114 0.886 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.675 -0.796 0.022 1.854 hybrid contribution 0.251 0.649 -0.128 0.708 sum 1.926 -0.147 -0.106 1.934 Atomic orbital electron populations 1.69715 1.07829 1.30243 1.31908 1.26086 0.94891 1.01978 0.91664 0.86093 0.81347 0.79750 0.78895 1.17710 1.19429 1.19327 1.20004 0.96773 0.90270 1.38776 0.88679 1.17591 0.90957 0.90732 0.87311 1.21099 0.97796 0.97109 1.00602 1.20637 0.98202 0.93330 0.98528 1.20357 1.00812 0.97343 1.07433 1.20590 0.93537 0.95393 0.95301 1.17225 0.96753 0.96485 1.08298 1.26418 0.93694 0.79367 0.93006 1.72172 1.09773 1.28483 1.17061 1.27057 0.98396 0.89365 1.00852 1.74531 1.09056 1.16224 1.14581 1.85580 1.29606 1.34924 1.47519 0.90054 0.85703 0.88623 0.88384 0.87573 0.77210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.14 10.93 55.56 0.61 -17.54 15 2 C 0.08 1.75 5.25 -17.30 -0.09 1.66 15 3 Si 0.92 17.69 29.57 -169.99 -5.03 12.66 15 4 H -0.25 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 7 C -0.43 -10.66 7.97 -37.89 -0.30 -10.96 15 8 H 0.10 2.37 5.84 -52.49 -0.31 2.06 15 9 C 0.14 3.46 5.55 -106.53 -0.59 2.87 15 10 C -0.15 -3.45 8.59 -39.27 -0.34 -3.79 15 11 C -0.09 -1.85 9.96 -39.97 -0.40 -2.25 15 12 C -0.24 -4.95 10.03 -39.39 -0.39 -5.35 15 13 C -0.03 -0.63 9.70 -39.21 -0.38 -1.01 15 14 C -0.18 -4.40 5.93 -104.34 -0.62 -5.01 15 15 C 0.28 6.72 7.83 -13.97 -0.11 6.61 15 16 N -0.54 -11.84 11.28 -14.04 -0.16 -11.99 15 17 C 0.14 2.67 13.08 -91.57 -1.20 1.47 15 18 N -0.43 -9.36 12.15 28.06 0.34 -9.02 15 19 O 0.08 1.83 8.47 16.31 0.14 1.97 15 20 H 0.29 6.06 8.29 -40.82 -0.34 5.72 15 21 H 0.13 2.96 6.33 -52.49 -0.33 2.63 15 22 H 0.10 1.75 8.06 -52.49 -0.42 1.32 15 23 H 0.10 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.11 2.19 7.89 -52.49 -0.41 1.77 15 25 H 0.21 2.99 8.06 -52.49 -0.42 2.57 15 LS Contribution 230.15 15.07 3.47 3.47 Total: -1.00 -26.24 230.15 -6.51 -32.75 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.46 Total: 3.47 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -4.42 Total: -15.77 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.79 Total: -38.55 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: 0.14 Total: 1.97 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -26.24 -6.51 -32.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236228788.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.498 kcal (2) G-P(sol) polarization free energy of solvation -26.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds