Wall clock time and date at job start Mon Mar 30 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86802 * 119.99744 * 2 1 4 4 H 1.48505 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46964 * 300.00020 * 3 2 1 6 6 H 1.48502 * 109.47208 * 60.00068 * 3 2 1 7 7 C 1.40217 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99380 * 169.63345 * 7 2 1 9 9 C 1.40759 * 120.00311 * 349.63406 * 7 2 1 10 10 C 1.40764 * 120.34454 * 329.54774 * 9 7 2 11 11 C 1.36464 * 120.00582 * 180.30603 * 10 9 7 12 12 C 1.38925 * 120.73390 * 359.69817 * 11 10 9 13 13 C 1.38065 * 120.70215 * 0.02562 * 12 11 10 14 14 C 1.39399 * 119.95792 * 0.02562 * 13 12 11 15 15 C 1.47252 * 120.35623 * 179.97438 * 14 13 12 16 16 N 1.32369 * 126.70125 * 354.34344 * 15 14 13 17 17 C 1.34071 * 105.54447 * 179.73546 * 16 15 14 18 18 N 1.30121 * 107.67088 * 0.02562 * 17 16 15 19 19 O 1.21282 * 110.53379 * 359.97438 * 18 17 16 20 20 H 0.96997 * 119.99691 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.99495 * 0.02562 * 10 9 7 22 22 H 1.07998 * 119.63019 * 179.71761 * 11 10 9 23 23 H 1.08000 * 119.64965 * 180.02562 * 12 11 10 24 24 H 1.08001 * 120.01808 * 179.97438 * 13 12 11 25 25 H 1.07994 * 126.16513 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0079 -1.2143 0.0005 8 1 3.0747 -1.2220 -0.1678 9 6 1.3214 -2.4233 0.2204 10 6 0.1709 -2.4506 1.0311 11 6 -0.4857 -3.6276 1.2447 12 6 -0.0358 -4.8070 0.6645 13 6 1.0860 -4.8135 -0.1403 14 6 1.7797 -3.6278 -0.3772 15 6 2.9774 -3.6247 -1.2337 16 7 3.5750 -4.6812 -1.7619 17 6 4.6095 -4.1957 -2.4630 18 7 4.5998 -2.9008 -2.3359 19 8 3.6739 -2.5489 -1.6361 20 1 -0.4849 0.8400 -0.0004 21 1 -0.1895 -1.5406 1.4878 22 1 -1.3651 -3.6423 1.8714 23 1 -0.5691 -5.7286 0.8450 24 1 1.4263 -5.7368 -0.5854 25 1 5.3229 -4.7750 -3.0302 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236228788.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:18 Heat of formation + Delta-G solvation = 65.849500 kcal Electronic energy + Delta-G solvation = -13764.079928 eV Core-core repulsion = 11323.809130 eV Total energy + Delta-G solvation = -2440.270798 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.05116 -39.52634 -36.41052 -35.66393 -33.82991 -31.66238 -30.80908 -27.47880 -25.22653 -24.53882 -22.68038 -22.09744 -19.56416 -18.66352 -18.34736 -17.30945 -16.63603 -15.91080 -15.69235 -15.13922 -14.49125 -14.16514 -13.77357 -13.37042 -13.10107 -12.86974 -12.83385 -12.48300 -12.21077 -11.94001 -11.57322 -11.45671 -11.24573 -11.19711 -9.43670 -9.28114 -8.78820 -6.53196 -0.09875 0.93671 1.13031 1.38203 1.49430 1.52258 1.78058 2.16639 2.21933 2.65658 3.18385 3.55624 3.59664 4.41903 4.43752 4.60755 4.80112 5.01528 5.09364 5.15796 5.18476 5.32529 5.52716 5.86065 5.94025 6.08051 6.18424 6.52155 6.70218 6.80624 7.44931 8.14629 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.015108 C = 0.009214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.291367 B = 1852.917887 C = 3037.979580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.043 3.957 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.169 4.169 11 C -0.082 4.082 12 C -0.231 4.231 13 C -0.036 4.036 14 C -0.205 4.205 15 C 0.270 3.730 16 N -0.545 5.545 17 C 0.156 3.844 18 N -0.446 5.446 19 O 0.050 5.950 20 H 0.298 0.702 21 H 0.116 0.884 22 H 0.128 0.872 23 H 0.134 0.866 24 H 0.119 0.881 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -1.762 0.464 2.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.176 1.176 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.110 3.890 10 C -0.188 4.188 11 C -0.101 4.101 12 C -0.250 4.250 13 C -0.056 4.056 14 C -0.210 4.210 15 C 0.062 3.938 16 N -0.281 5.281 17 C -0.138 4.138 18 N -0.165 5.165 19 O 0.002 5.998 20 H 0.109 0.891 21 H 0.134 0.866 22 H 0.146 0.854 23 H 0.152 0.848 24 H 0.137 0.863 25 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 1.546 -1.513 -0.009 2.163 hybrid contribution 0.278 0.709 -0.141 0.775 sum 1.824 -0.804 -0.150 1.999 Atomic orbital electron populations 1.69720 1.08705 1.31551 1.32203 1.26747 0.95604 1.04291 0.90967 0.85205 0.79300 0.76169 0.79560 1.18852 1.18853 1.17617 1.20078 0.96434 0.91482 1.40852 0.89957 1.17904 0.91856 0.91276 0.87951 1.21126 0.98337 0.97934 1.01416 1.21005 0.98557 0.92558 0.97983 1.20783 0.99996 0.98548 1.05697 1.20837 0.93922 0.95159 0.95695 1.17558 0.97480 0.97165 1.08812 1.26588 0.93997 0.79888 0.93374 1.72191 1.10463 1.28083 1.17401 1.27984 0.97741 0.88869 0.99175 1.74527 1.09117 1.17557 1.15308 1.85576 1.30323 1.35537 1.48339 0.89066 0.86601 0.85388 0.84767 0.86298 0.72142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.87 10.93 21.87 0.24 -37.63 15 2 C 0.04 2.03 5.25 85.34 0.45 2.47 15 3 Si 0.98 36.62 29.57 68.60 2.03 38.65 15 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 6 H -0.25 -8.71 7.11 99.48 0.71 -8.01 15 7 C -0.46 -23.59 7.97 23.37 0.19 -23.40 15 8 H 0.08 4.31 5.84 -2.91 -0.02 4.29 15 9 C 0.11 5.84 5.55 -21.10 -0.12 5.73 15 10 C -0.17 -7.98 8.59 22.47 0.19 -7.79 15 11 C -0.08 -3.32 9.96 22.02 0.22 -3.10 15 12 C -0.23 -8.97 10.03 22.39 0.22 -8.74 15 13 C -0.04 -1.56 9.70 22.51 0.22 -1.35 15 14 C -0.20 -9.97 5.93 -19.68 -0.12 -10.09 15 15 C 0.27 12.90 7.83 87.09 0.68 13.58 15 16 N -0.54 -23.29 11.28 -314.63 -3.55 -26.84 15 17 C 0.16 5.76 13.08 180.68 2.36 8.12 15 18 N -0.45 -19.23 12.15 -68.31 -0.83 -20.06 15 19 O 0.05 2.42 8.47 68.44 0.58 3.00 15 20 H 0.30 12.56 8.29 -92.71 -0.77 11.79 15 21 H 0.12 5.59 6.33 -2.91 -0.02 5.57 15 22 H 0.13 4.29 8.06 -2.91 -0.02 4.26 15 23 H 0.13 4.22 8.06 -2.91 -0.02 4.20 15 24 H 0.12 4.70 7.89 -2.91 -0.02 4.68 15 25 H 0.26 6.39 8.06 -2.91 -0.02 6.37 15 Total: -1.00 -56.71 230.15 3.99 -52.72 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.22 Total: 14.75 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.30 Total: -24.58 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -4.14 Total: -84.53 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.58 Total: 3.00 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -56.71 3.99 -52.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236228788.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.566 kcal (2) G-P(sol) polarization free energy of solvation -56.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds