Wall clock time and date at job start Mon Mar 30 2020 02:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86798 * 119.99836 * 2 1 4 4 H 1.48501 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47206 * 299.99928 * 3 2 1 6 6 H 1.48507 * 109.47231 * 60.00147 * 3 2 1 7 7 C 1.39985 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99849 * 197.85455 * 7 2 1 9 9 C 1.41103 * 120.00468 * 17.85999 * 7 2 1 10 10 C 1.40039 * 120.18593 * 24.70424 * 9 7 2 11 11 C 1.39889 * 119.50301 * 179.97438 * 10 9 7 12 12 C 1.40978 * 120.57582 * 180.02562 * 11 10 9 13 13 C 1.36079 * 119.72939 * 179.97438 * 12 11 10 14 14 C 1.39323 * 120.89772 * 359.97438 * 13 12 11 15 15 C 1.36308 * 121.00445 * 0.02562 * 14 13 12 16 16 C 1.40370 * 119.86663 * 359.97438 * 15 14 13 17 17 C 1.40969 * 120.45070 * 180.02562 * 16 15 14 18 18 C 1.35623 * 120.34097 * 179.97438 * 17 16 15 19 19 F 1.35098 * 119.97207 * 180.27765 * 18 17 16 20 20 H 0.96995 * 120.00399 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.25129 * 0.02562 * 10 9 7 22 22 H 1.08002 * 120.13211 * 359.94864 * 12 11 10 23 23 H 1.08005 * 119.55146 * 180.02562 * 13 12 11 24 24 H 1.07994 * 119.50053 * 180.02562 * 14 13 12 25 25 H 1.07993 * 120.06683 * 180.02562 * 15 14 13 26 26 H 1.08000 * 119.83131 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3965 1.2126 7 6 2.0081 -1.2123 0.0005 8 1 3.0491 -1.2348 0.2873 9 6 1.3536 -2.4051 -0.3737 10 6 0.2319 -2.3599 -1.2109 11 6 -0.4056 -3.5512 -1.5734 12 6 -1.5361 -3.5321 -2.4154 13 6 -2.1426 -4.7012 -2.7575 14 6 -1.6614 -5.9212 -2.2871 15 6 -0.5709 -5.9783 -1.4713 16 6 0.0834 -4.7948 -1.0950 17 6 1.2126 -4.8396 -0.2523 18 6 1.8433 -3.6948 0.1095 19 9 2.9282 -3.7469 0.9129 20 1 -0.4850 0.8400 0.0004 21 1 -0.1377 -1.4126 -1.5747 22 1 -1.9195 -2.5933 -2.7871 23 1 -3.0083 -4.6833 -3.4031 24 1 -2.1599 -6.8354 -2.5732 25 1 -0.2105 -6.9323 -1.1158 26 1 1.5773 -5.7905 0.1072 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238545587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:02 Heat of formation + Delta-G solvation = -23.548710 kcal Electronic energy + Delta-G solvation = -13462.911461 eV Core-core repulsion = 10998.844104 eV Total energy + Delta-G solvation = -2464.067357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.62611 -38.77461 -35.40342 -33.43062 -31.34466 -29.39682 -27.97146 -25.45784 -22.08647 -21.46714 -20.78439 -17.86663 -16.71825 -16.19620 -15.33923 -14.81769 -14.33394 -14.06158 -13.74373 -13.22189 -12.76310 -12.35016 -12.22019 -11.99304 -11.69697 -11.31152 -11.04831 -10.65642 -10.53362 -9.93787 -9.85768 -9.65229 -9.29443 -8.78412 -7.41571 -7.00780 -6.90970 -4.51072 1.65869 2.14076 2.89459 2.97449 3.03539 3.23012 3.76501 3.85546 4.68314 5.39692 5.48102 5.62623 5.71817 5.90526 6.03337 6.24143 6.40339 6.57562 6.79154 6.83542 6.89418 7.17755 7.25811 7.37862 7.48782 7.54405 7.83654 7.88248 8.05727 8.38114 8.52931 8.63197 9.92079 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.035631 B = 0.010113 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.637942 B = 2767.928063 C = 3476.938506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.437 4.437 8 H 0.086 0.914 9 C 0.085 3.915 10 C -0.201 4.201 11 C -0.003 4.003 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.186 4.186 15 C -0.081 4.081 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.041 3.959 19 F -0.155 7.155 20 H 0.286 0.714 21 H 0.130 0.870 22 H 0.110 0.890 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 -2.519 -2.247 3.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.104 0.896 9 C 0.082 3.918 10 C -0.221 4.221 11 C -0.004 4.004 12 C -0.152 4.152 13 C -0.139 4.139 14 C -0.205 4.205 15 C -0.099 4.099 16 C -0.122 4.122 17 C -0.160 4.160 18 C 0.022 3.978 19 F -0.134 7.134 20 H 0.097 0.903 21 H 0.148 0.852 22 H 0.128 0.872 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.025 -2.347 -2.183 3.365 hybrid contribution 0.430 0.656 0.240 0.820 sum -0.595 -1.691 -1.943 2.644 Atomic orbital electron populations 1.69825 1.07754 1.29889 1.31937 1.25983 0.94844 1.01727 0.92259 0.86125 0.81040 0.80083 0.78857 1.18071 1.19333 1.19648 1.19638 0.98431 0.90956 1.37400 0.89567 1.18575 0.92926 0.89488 0.90820 1.21060 1.00836 0.96069 1.04175 1.18004 0.94214 0.92948 0.95199 1.20936 0.96710 0.97320 1.00218 1.20506 0.99661 0.92970 1.00733 1.20324 0.99699 0.96861 1.03596 1.20734 0.95521 0.96355 0.97299 1.17393 0.98150 0.92996 1.03683 1.20422 0.97766 0.96111 1.01683 1.19041 0.87571 0.95218 0.95973 1.91325 1.53046 1.97275 1.71714 0.90280 0.85198 0.87192 0.87978 0.88057 0.87679 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.03 10.97 55.55 0.61 -18.42 15 2 C 0.07 1.74 5.13 -17.33 -0.09 1.65 15 3 Si 0.92 17.83 29.60 -169.99 -5.03 12.80 15 4 H -0.26 -5.00 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.44 -11.29 8.83 -37.84 -0.33 -11.62 15 8 H 0.09 2.18 7.80 -52.48 -0.41 1.77 15 9 C 0.09 2.24 5.71 -104.95 -0.60 1.64 15 10 C -0.20 -5.15 8.43 -38.29 -0.32 -5.47 15 11 C 0.00 -0.08 5.74 -106.83 -0.61 -0.69 15 12 C -0.13 -2.80 9.75 -39.32 -0.38 -3.18 15 13 C -0.12 -2.24 9.95 -39.95 -0.40 -2.64 15 14 C -0.19 -3.39 9.95 -39.87 -0.40 -3.79 15 15 C -0.08 -1.58 9.72 -39.47 -0.38 -1.96 15 16 C -0.12 -2.74 5.75 -106.65 -0.61 -3.36 15 17 C -0.14 -3.16 9.65 -39.48 -0.38 -3.55 15 18 C 0.04 1.02 7.40 -37.33 -0.28 0.75 15 19 F -0.15 -3.71 16.83 2.25 0.04 -3.67 15 20 H 0.29 6.32 8.30 -40.82 -0.34 5.98 15 21 H 0.13 3.38 6.16 -52.49 -0.32 3.06 15 22 H 0.11 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.10 1.58 8.06 -52.48 -0.42 1.16 15 24 H 0.10 1.54 8.06 -52.49 -0.42 1.12 15 25 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.11 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 237.29 15.07 3.58 3.58 Total: -1.00 -26.57 237.29 -7.58 -34.15 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -1.98 Total: 3.78 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -4.79 Total: -32.21 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.61 Total: -18.42 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.57 -7.58 -34.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238545587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.605 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds