Wall clock time and date at job start Mon Mar 30 2020 02:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86798 * 119.99836 * 2 1 4 4 H 1.48501 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47206 * 299.99928 * 3 2 1 6 6 H 1.48507 * 109.47231 * 60.00147 * 3 2 1 7 7 C 1.39985 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99849 * 197.85455 * 7 2 1 9 9 C 1.41103 * 120.00468 * 17.85999 * 7 2 1 10 10 C 1.40039 * 120.18593 * 24.70424 * 9 7 2 11 11 C 1.39889 * 119.50301 * 179.97438 * 10 9 7 12 12 C 1.40978 * 120.57582 * 180.02562 * 11 10 9 13 13 C 1.36079 * 119.72939 * 179.97438 * 12 11 10 14 14 C 1.39323 * 120.89772 * 359.97438 * 13 12 11 15 15 C 1.36308 * 121.00445 * 0.02562 * 14 13 12 16 16 C 1.40370 * 119.86663 * 359.97438 * 15 14 13 17 17 C 1.40969 * 120.45070 * 180.02562 * 16 15 14 18 18 C 1.35623 * 120.34097 * 179.97438 * 17 16 15 19 19 F 1.35098 * 119.97207 * 180.27765 * 18 17 16 20 20 H 0.96995 * 120.00399 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.25129 * 0.02562 * 10 9 7 22 22 H 1.08002 * 120.13211 * 359.94864 * 12 11 10 23 23 H 1.08005 * 119.55146 * 180.02562 * 13 12 11 24 24 H 1.07994 * 119.50053 * 180.02562 * 14 13 12 25 25 H 1.07993 * 120.06683 * 180.02562 * 15 14 13 26 26 H 1.08000 * 119.83131 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3965 1.2126 7 6 2.0081 -1.2123 0.0005 8 1 3.0491 -1.2348 0.2873 9 6 1.3536 -2.4051 -0.3737 10 6 0.2319 -2.3599 -1.2109 11 6 -0.4056 -3.5512 -1.5734 12 6 -1.5361 -3.5321 -2.4154 13 6 -2.1426 -4.7012 -2.7575 14 6 -1.6614 -5.9212 -2.2871 15 6 -0.5709 -5.9783 -1.4713 16 6 0.0834 -4.7948 -1.0950 17 6 1.2126 -4.8396 -0.2523 18 6 1.8433 -3.6948 0.1095 19 9 2.9282 -3.7469 0.9129 20 1 -0.4850 0.8400 0.0004 21 1 -0.1377 -1.4126 -1.5747 22 1 -1.9195 -2.5933 -2.7871 23 1 -3.0083 -4.6833 -3.4031 24 1 -2.1599 -6.8354 -2.5732 25 1 -0.2105 -6.9323 -1.1158 26 1 1.5773 -5.7905 0.1072 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238545587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:01 Heat of formation + Delta-G solvation = -36.186262 kcal Electronic energy + Delta-G solvation = -13463.459466 eV Core-core repulsion = 10998.844104 eV Total energy + Delta-G solvation = -2464.615362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.48539 -40.45705 -37.14097 -35.17913 -33.04129 -31.15417 -29.66741 -27.24818 -23.81631 -23.18686 -22.48645 -19.63757 -18.51732 -17.90106 -17.09392 -16.44782 -16.19998 -15.71479 -15.40641 -14.91910 -14.48066 -13.97405 -13.92369 -13.71280 -13.42645 -12.93116 -12.70303 -12.32871 -12.11519 -11.62357 -11.57282 -11.38120 -11.02917 -10.49559 -9.20044 -8.78077 -8.62516 -6.41549 -0.02442 0.42873 1.32694 1.36611 1.49721 1.51957 2.12390 2.17935 2.92644 3.59818 3.70372 3.96780 4.28172 4.36468 4.49042 4.62436 4.77058 4.86614 5.07344 5.08772 5.21856 5.47019 5.57826 5.66532 5.82637 5.86142 6.00618 6.06269 6.40258 6.52421 6.67368 6.78017 8.17817 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.035631 B = 0.010113 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.637942 B = 2767.928063 C = 3476.938506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.077 0.923 9 C 0.055 3.945 10 C -0.220 4.220 11 C -0.027 4.027 12 C -0.157 4.157 13 C -0.106 4.106 14 C -0.172 4.172 15 C -0.086 4.086 16 C -0.139 4.139 17 C -0.128 4.128 18 C 0.006 3.994 19 F -0.158 7.158 20 H 0.295 0.705 21 H 0.114 0.886 22 H 0.114 0.886 23 H 0.142 0.858 24 H 0.146 0.854 25 H 0.140 0.860 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -4.148 -3.223 5.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.186 1.186 7 C -0.507 4.507 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.241 4.241 11 C -0.027 4.027 12 C -0.175 4.175 13 C -0.124 4.124 14 C -0.190 4.190 15 C -0.104 4.104 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.013 4.013 19 F -0.137 7.137 20 H 0.106 0.894 21 H 0.131 0.869 22 H 0.132 0.868 23 H 0.160 0.840 24 H 0.164 0.836 25 H 0.157 0.843 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.302 -3.997 -3.162 5.592 hybrid contribution 0.629 0.904 0.428 1.182 sum -1.673 -3.093 -2.733 4.454 Atomic orbital electron populations 1.69859 1.09093 1.31245 1.32709 1.26828 0.95592 1.04650 0.91146 0.85054 0.79250 0.75443 0.79410 1.18259 1.18235 1.18558 1.19797 0.98399 0.92370 1.40102 0.90478 1.18924 0.93770 0.90607 0.91544 1.21011 1.01559 0.96423 1.05092 1.18326 0.95303 0.92944 0.96111 1.21108 0.96609 0.99034 1.00750 1.21011 0.99789 0.92092 0.99493 1.20905 0.98469 0.98349 1.01233 1.21120 0.95626 0.96403 0.97236 1.17776 0.98518 0.93926 1.03810 1.20784 0.96986 0.96575 1.00372 1.19211 0.88691 0.95729 0.97688 1.91294 1.53216 1.97288 1.71925 0.89415 0.86859 0.86756 0.84033 0.83626 0.84264 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.49 10.97 21.83 0.24 -41.25 15 2 C 0.04 1.76 5.13 85.27 0.44 2.20 15 3 Si 0.99 37.62 29.60 68.60 2.03 39.65 15 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 6 H -0.26 -9.41 7.11 99.48 0.71 -8.71 15 7 C -0.48 -26.26 8.83 23.40 0.21 -26.06 15 8 H 0.08 4.17 7.80 -2.91 -0.02 4.14 15 9 C 0.05 3.03 5.71 -20.08 -0.11 2.92 15 10 C -0.22 -11.84 8.43 23.11 0.19 -11.64 15 11 C -0.03 -1.27 5.74 -21.29 -0.12 -1.39 15 12 C -0.16 -6.37 9.75 22.44 0.22 -6.15 15 13 C -0.11 -3.49 9.95 22.03 0.22 -3.27 15 14 C -0.17 -5.31 9.95 22.08 0.22 -5.09 15 15 C -0.09 -3.00 9.72 22.34 0.22 -2.78 15 16 C -0.14 -6.13 5.75 -21.18 -0.12 -6.25 15 17 C -0.13 -5.71 9.65 22.33 0.22 -5.50 15 18 C 0.01 0.32 7.40 23.73 0.18 0.50 15 19 F -0.16 -7.87 16.83 44.97 0.76 -7.12 15 20 H 0.29 13.48 8.30 -92.71 -0.77 12.71 15 21 H 0.11 6.29 6.16 -2.91 -0.02 6.27 15 22 H 0.11 4.42 8.06 -2.91 -0.02 4.39 15 23 H 0.14 3.57 8.06 -2.91 -0.02 3.55 15 24 H 0.15 3.33 8.06 -2.91 -0.02 3.30 15 25 H 0.14 3.89 8.06 -2.91 -0.02 3.86 15 26 H 0.14 5.26 8.06 -2.91 -0.02 5.23 15 Total: -1.00 -60.10 237.29 5.97 -54.14 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.19 Total: 17.10 kcal Atomic # 6 Polarization: -64.27 SS G_CDS: 1.75 Total: -62.53 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.24 Total: -41.25 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.76 Total: -7.12 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -60.10 5.97 -54.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238545587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.949 kcal (2) G-P(sol) polarization free energy of solvation -60.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds