Wall clock time and date at job start Mon Mar 30 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47337 * 275.37679 * 3 2 1 5 5 H 1.48495 * 109.47213 * 35.38329 * 3 2 1 6 6 H 1.48507 * 109.47081 * 155.37985 * 3 2 1 7 7 C 1.40123 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99823 * 342.02499 * 7 2 1 9 9 C 1.40432 * 119.99993 * 162.03833 * 7 2 1 10 10 C 1.40549 * 120.72127 * 329.92817 * 9 7 2 11 11 C 1.38120 * 120.41719 * 179.97438 * 10 9 7 12 12 C 1.37721 * 121.79295 * 0.02562 * 11 10 9 13 13 C 1.40535 * 120.80204 * 359.97438 * 12 11 10 14 14 C 1.40754 * 121.17086 * 179.97438 * 13 12 11 15 15 F 1.35102 * 120.14032 * 359.97438 * 14 13 12 16 16 C 1.36622 * 119.71109 * 180.02562 * 14 13 12 17 17 C 1.38977 * 120.89831 * 0.25192 * 16 14 13 18 18 C 1.37746 * 120.75500 * 359.43757 * 17 16 14 19 19 C 1.39505 * 119.61771 * 0.59920 * 18 17 16 20 20 H 0.96997 * 120.00218 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.78757 * 359.96466 * 10 9 7 22 22 H 1.07998 * 119.09973 * 180.02562 * 11 10 9 23 23 H 1.07995 * 119.59705 * 179.97438 * 12 11 10 24 24 H 1.07994 * 119.54556 * 179.97438 * 16 14 13 25 25 H 1.08007 * 119.61948 * 179.74085 * 17 16 14 26 26 H 1.08003 * 120.18591 * 180.25103 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3755 2.1120 -1.3939 5 1 1.5005 2.6171 0.8107 6 1 3.5914 1.4100 0.5833 7 6 2.0082 -1.2135 -0.0005 8 1 1.5077 -2.1261 0.2877 9 6 3.3612 -1.2430 -0.3756 10 6 3.8692 -0.3182 -1.3041 11 6 5.2011 -0.3526 -1.6681 12 6 6.0728 -1.2812 -1.1441 13 6 5.6324 -2.2353 -0.2109 14 6 6.5164 -3.1882 0.3291 15 9 7.8141 -3.1993 -0.0465 16 6 6.0562 -4.1025 1.2340 17 6 4.7231 -4.1093 1.6267 18 6 3.8351 -3.1857 1.1208 19 6 4.2763 -2.2406 0.1944 20 1 -0.4850 0.8400 0.0004 21 1 3.2139 0.4238 -1.7357 22 1 5.5690 0.3684 -2.3831 23 1 7.1073 -1.2762 -1.4541 24 1 6.7367 -4.8327 1.6464 25 1 4.3805 -4.8441 2.3403 26 1 2.8019 -3.1968 1.4354 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238553722.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:03 Heat of formation + Delta-G solvation = -34.957849 kcal Electronic energy + Delta-G solvation = -13574.296925 eV Core-core repulsion = 11109.734831 eV Total energy + Delta-G solvation = -2464.562094 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.70775 -40.48330 -37.16181 -35.65433 -33.19321 -31.10248 -30.20640 -27.04681 -24.14438 -23.74349 -22.16383 -19.67604 -18.59560 -17.86940 -17.40521 -16.84631 -16.45386 -16.22425 -15.40954 -15.09833 -14.49880 -14.19309 -13.85898 -13.68665 -13.43836 -13.11176 -12.85287 -12.68742 -12.10675 -11.72717 -11.66186 -11.46963 -11.07908 -10.29588 -9.44947 -9.12310 -8.71355 -6.54113 -0.19420 0.30645 1.03535 1.26841 1.40251 1.48463 2.05186 2.19418 2.67007 3.43643 3.49682 3.93228 4.09387 4.26418 4.36265 4.51608 4.62085 4.78266 4.88344 4.96842 5.22083 5.38208 5.45418 5.49796 5.55942 5.80357 5.92091 5.98966 6.13760 6.29324 6.54454 6.63982 7.91158 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.010931 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.301275 B = 2560.875262 C = 3099.690960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.056 3.944 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.313 4.313 11 C -0.037 4.037 12 C -0.277 4.277 13 C -0.042 4.042 14 C 0.037 3.963 15 F -0.150 7.150 16 C -0.128 4.128 17 C -0.145 4.145 18 C -0.086 4.086 19 C -0.114 4.114 20 H 0.304 0.696 21 H 0.103 0.897 22 H 0.124 0.876 23 H 0.113 0.887 24 H 0.156 0.844 25 H 0.159 0.841 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -1.918 2.116 6.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.165 4.165 3 Si 0.788 3.212 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.459 4.459 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.332 4.332 11 C -0.056 4.056 12 C -0.296 4.296 13 C -0.042 4.042 14 C 0.018 3.982 15 F -0.129 7.129 16 C -0.146 4.146 17 C -0.163 4.163 18 C -0.105 4.105 19 C -0.115 4.115 20 H 0.115 0.885 21 H 0.120 0.880 22 H 0.142 0.858 23 H 0.131 0.869 24 H 0.174 0.826 25 H 0.177 0.823 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.493 -1.837 2.117 6.167 hybrid contribution 0.160 0.716 -0.303 0.794 sum 5.652 -1.121 1.814 6.041 Atomic orbital electron populations 1.69625 1.09044 1.32641 1.31702 1.26887 0.95353 1.04198 0.90038 0.85440 0.79535 0.76419 0.79800 1.18211 1.19779 1.18260 1.19525 0.93392 0.96381 1.36592 0.89918 1.18847 0.91964 0.90755 0.89659 1.20857 0.96806 1.07873 1.07699 1.20708 0.92662 0.95918 0.96264 1.20490 0.99634 1.02290 1.07188 1.18083 0.92824 0.95855 0.97465 1.17563 0.78142 1.00685 1.01835 1.91373 1.34303 1.96325 1.90859 1.20974 0.97621 0.98716 0.97335 1.21032 0.91951 1.00511 1.02788 1.21377 1.00301 0.93584 0.95210 1.19197 0.91927 1.00068 1.00292 0.88456 0.87978 0.85827 0.86855 0.82600 0.82343 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.69 13.92 21.86 0.30 -39.39 15 2 C 0.06 2.74 5.41 85.31 0.46 3.20 15 3 Si 0.96 40.41 24.53 68.60 1.68 42.10 15 4 H -0.26 -10.28 6.72 99.48 0.67 -9.61 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.26 -11.55 6.86 99.48 0.68 -10.87 15 7 C -0.43 -22.17 8.92 23.26 0.21 -21.96 15 8 H 0.08 4.37 7.06 -2.91 -0.02 4.35 15 9 C 0.09 4.54 5.26 -19.92 -0.10 4.44 15 10 C -0.31 -14.87 7.18 22.81 0.16 -14.70 15 11 C -0.04 -1.62 9.92 22.12 0.22 -1.40 15 12 C -0.28 -12.14 9.62 22.71 0.22 -11.92 15 13 C -0.04 -1.87 5.74 -21.29 -0.12 -1.99 15 14 C 0.04 1.45 7.26 22.51 0.16 1.62 15 15 F -0.15 -5.69 16.62 44.97 0.75 -4.94 15 16 C -0.13 -4.20 9.92 22.07 0.22 -3.98 15 17 C -0.14 -4.72 10.01 22.33 0.22 -4.50 15 18 C -0.09 -3.48 9.46 22.46 0.21 -3.26 15 19 C -0.11 -5.32 5.90 -19.89 -0.12 -5.44 15 20 H 0.30 13.27 8.29 -92.71 -0.77 12.50 15 21 H 0.10 4.73 4.76 -2.91 -0.01 4.72 15 22 H 0.12 4.49 8.06 -2.91 -0.02 4.47 15 23 H 0.11 4.54 7.68 -2.91 -0.02 4.52 15 24 H 0.16 3.92 8.06 -2.91 -0.02 3.90 15 25 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 26 H 0.13 5.03 6.74 -2.91 -0.02 5.01 15 Total: -1.00 -54.74 229.06 5.62 -49.12 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.14 Total: 13.03 kcal Atomic # 6 Polarization: -61.65 SS G_CDS: 1.74 Total: -59.91 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.30 Total: -39.39 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.75 Total: -4.94 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.68 Total: 42.10 kcal Total: -54.74 5.62 -49.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553722.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.158 kcal (2) G-P(sol) polarization free energy of solvation -54.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds