Wall clock time and date at job start Mon Mar 30 2020 02:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48504 * 109.47056 * 275.36519 * 3 2 1 5 5 H 1.48500 * 109.47311 * 35.36316 * 3 2 1 6 6 H 1.48503 * 109.47055 * 155.36751 * 3 2 1 7 7 C 1.40138 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99560 * 342.07718 * 7 2 1 9 9 C 1.40451 * 120.00326 * 162.06332 * 7 2 1 10 10 C 1.40468 * 120.69738 * 329.79005 * 9 7 2 11 11 C 1.38371 * 120.41019 * 180.32964 * 10 9 7 12 12 F 1.35099 * 119.13879 * 179.97438 * 11 10 9 13 13 C 1.37919 * 121.72697 * 359.89450 * 11 10 9 14 14 C 1.40616 * 120.77546 * 0.08578 * 13 11 10 15 15 C 1.40525 * 121.13732 * 179.97438 * 14 13 11 16 16 C 1.36327 * 119.77093 * 180.02562 * 15 14 13 17 17 C 1.39082 * 120.92676 * 0.02562 * 16 15 14 18 18 C 1.37696 * 120.71535 * 359.97438 * 17 16 15 19 19 C 1.39520 * 119.56726 * 0.02562 * 18 17 16 20 20 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.79783 * 0.25007 * 10 9 7 22 22 H 1.08000 * 119.61642 * 180.02562 * 13 11 10 23 23 H 1.07997 * 120.11280 * 0.04328 * 15 14 13 24 24 H 1.07999 * 119.53892 * 179.97438 * 16 15 14 25 25 H 1.08001 * 119.64275 * 179.97438 * 17 16 15 26 26 H 1.07997 * 120.21249 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3754 2.1120 -1.3940 5 1 1.5000 2.6174 0.8103 6 1 3.5910 1.4102 0.5836 7 6 2.0081 -1.2136 0.0005 8 1 1.5074 -2.1261 0.2888 9 6 3.3615 -1.2433 -0.3740 10 6 3.8684 -0.3213 -1.3046 11 6 5.2011 -0.3603 -1.6745 12 9 5.6613 0.5385 -2.5721 13 6 6.0726 -1.2916 -1.1497 14 6 5.6306 -2.2430 -0.2133 15 6 6.5117 -3.1956 0.3259 16 6 6.0532 -4.1056 1.2316 17 6 4.7213 -4.1067 1.6321 18 6 3.8328 -3.1865 1.1224 19 6 4.2750 -2.2437 0.1939 20 1 -0.4850 0.8400 -0.0004 21 1 3.2135 0.4219 -1.7351 22 1 7.1063 -1.2909 -1.4622 23 1 7.5486 -3.2067 0.0241 24 1 6.7336 -4.8363 1.6433 25 1 4.3802 -4.8374 2.3506 26 1 2.8004 -3.1945 1.4394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620331.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:36 Heat of formation + Delta-G solvation = -37.961324 kcal Electronic energy + Delta-G solvation = -13582.010385 eV Core-core repulsion = 11117.318051 eV Total energy + Delta-G solvation = -2464.692335 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.75536 -40.54273 -37.11348 -35.51928 -33.43303 -30.79060 -30.28399 -27.21542 -24.11508 -23.51751 -22.24077 -19.86670 -18.43491 -18.06024 -17.49345 -16.61198 -16.38054 -15.84023 -15.48272 -15.11753 -14.86497 -14.15351 -13.86130 -13.77776 -13.59112 -13.20042 -12.90132 -12.46181 -12.16838 -11.72522 -11.59925 -11.46596 -11.09115 -10.43904 -9.29135 -9.20333 -8.75345 -6.66614 -0.12321 0.35021 1.06859 1.22234 1.35011 1.43111 1.98417 2.07502 2.71675 3.48085 3.62287 4.03678 4.12790 4.31977 4.46574 4.56169 4.60655 4.73269 4.85851 4.96852 5.29945 5.34273 5.45435 5.53656 5.68242 5.81372 5.83601 5.95033 6.06244 6.35605 6.47500 6.56315 7.82460 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.026927 B = 0.013612 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.611810 B = 2056.552114 C = 2907.518904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.060 3.940 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.425 4.425 8 H 0.089 0.911 9 C 0.112 3.888 10 C -0.362 4.362 11 C 0.154 3.846 12 F -0.161 7.161 13 C -0.302 4.302 14 C 0.000 4.000 15 C -0.152 4.152 16 C -0.096 4.096 17 C -0.165 4.165 18 C -0.087 4.087 19 C -0.135 4.135 20 H 0.306 0.694 21 H 0.103 0.897 22 H 0.132 0.868 23 H 0.141 0.859 24 H 0.153 0.847 25 H 0.144 0.856 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -2.978 2.757 7.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.107 0.893 9 C 0.108 3.892 10 C -0.382 4.382 11 C 0.135 3.865 12 F -0.140 7.140 13 C -0.322 4.322 14 C 0.000 4.000 15 C -0.170 4.170 16 C -0.114 4.114 17 C -0.183 4.183 18 C -0.105 4.105 19 C -0.136 4.136 20 H 0.118 0.882 21 H 0.120 0.880 22 H 0.149 0.851 23 H 0.158 0.842 24 H 0.171 0.829 25 H 0.162 0.838 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.415 -2.858 2.745 7.540 hybrid contribution -0.185 1.087 -0.513 1.216 sum 6.230 -1.771 2.232 6.851 Atomic orbital electron populations 1.69600 1.08866 1.32820 1.30680 1.26829 0.95344 1.03993 0.90039 0.85524 0.79766 0.76968 0.79499 1.19235 1.18851 1.18364 1.19568 0.93172 0.96488 1.35797 0.89263 1.18607 0.92205 0.89874 0.88506 1.20594 0.94897 1.11300 1.11433 1.17575 0.92605 0.87983 0.88311 1.91350 1.89626 1.66767 1.66279 1.20495 0.99582 1.02841 1.09292 1.17874 0.92594 0.94860 0.94651 1.21110 0.99481 0.96471 0.99903 1.21101 0.95823 0.98216 0.96256 1.21284 0.93882 1.00307 1.02825 1.21260 0.99928 0.93951 0.95373 1.19417 0.93193 0.99972 1.01005 0.88208 0.87972 0.85061 0.84167 0.82936 0.83820 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.40 13.92 21.86 0.30 -39.10 15 2 C 0.06 3.00 5.41 85.32 0.46 3.46 15 3 Si 0.96 42.03 24.53 68.60 1.68 43.71 15 4 H -0.27 -11.65 6.73 99.48 0.67 -10.98 15 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 6 H -0.26 -12.14 6.86 99.48 0.68 -11.46 15 7 C -0.42 -21.99 8.91 23.27 0.21 -21.78 15 8 H 0.09 4.72 7.06 -2.91 -0.02 4.70 15 9 C 0.11 5.68 5.25 -19.93 -0.10 5.58 15 10 C -0.36 -18.34 7.15 22.85 0.16 -18.17 15 11 C 0.15 7.35 7.23 22.23 0.16 7.51 15 12 F -0.16 -7.28 17.23 44.97 0.77 -6.51 15 13 C -0.30 -13.14 9.73 22.77 0.22 -12.91 15 14 C 0.00 0.02 5.74 -21.33 -0.12 -0.10 15 15 C -0.15 -5.12 9.77 22.38 0.22 -4.90 15 16 C -0.10 -2.83 9.95 22.03 0.22 -2.61 15 17 C -0.16 -5.29 10.02 22.34 0.22 -5.06 15 18 C -0.09 -3.50 9.45 22.45 0.21 -3.29 15 19 C -0.14 -6.27 5.90 -19.89 -0.12 -6.39 15 20 H 0.31 13.42 8.29 -92.71 -0.77 12.66 15 21 H 0.10 5.20 4.76 -2.91 -0.01 5.18 15 22 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 23 H 0.14 3.87 8.06 -2.91 -0.02 3.84 15 24 H 0.15 3.16 8.06 -2.91 -0.02 3.13 15 25 H 0.14 3.58 8.06 -2.91 -0.02 3.55 15 26 H 0.12 4.76 6.74 -2.91 -0.02 4.74 15 Total: -1.00 -55.59 229.97 5.65 -49.94 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.14 Total: 10.62 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 1.74 Total: -58.67 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.30 Total: -39.10 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.77 Total: -6.51 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.68 Total: 43.71 kcal Total: -55.59 5.65 -49.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620331.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.980 kcal (2) G-P(sol) polarization free energy of solvation -55.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds