Wall clock time and date at job start Mon Mar 30 2020 02:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30966 * 1 3 3 Si 1.86805 * 119.99467 * 2 1 4 4 H 1.48502 * 109.46724 * 239.99756 * 3 2 1 5 5 H 1.48500 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46988 * 119.99868 * 3 2 1 7 7 C 1.39894 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00431 * 197.43972 * 7 2 1 9 9 C 1.40444 * 119.99662 * 17.43113 * 7 2 1 10 10 C 1.41202 * 121.15436 * 23.56681 * 9 7 2 11 11 N 1.31349 * 119.63601 * 179.97438 * 10 9 7 12 12 C 1.33542 * 122.65558 * 0.02562 * 11 10 9 13 13 C 1.40470 * 118.84780 * 180.02562 * 12 11 10 14 14 C 1.36559 * 119.63642 * 179.97438 * 13 12 11 15 15 C 1.40035 * 119.58780 * 0.02562 * 14 13 12 16 16 C 1.35348 * 120.01087 * 359.97438 * 15 14 13 17 17 N 1.36278 * 120.76463 * 0.02818 * 16 15 14 18 18 C 1.35194 * 119.24752 * 179.97438 * 17 16 15 19 19 O 1.21786 * 120.94498 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00453 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.17861 * 0.02562 * 10 9 7 22 22 H 1.08004 * 120.18530 * 0.27144 * 13 12 11 23 23 H 1.08002 * 120.20672 * 179.97438 * 14 13 12 24 24 H 1.08002 * 119.99293 * 180.02562 * 15 14 13 25 25 H 1.08000 * 119.62373 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2435 1.6179 0.0000 4 1 3.0973 1.6965 -1.2125 5 1 1.2785 2.7465 -0.0006 6 1 3.0972 1.6966 1.2125 7 6 2.0092 -1.2115 0.0005 8 1 3.0520 -1.2328 0.2809 9 6 1.3554 -2.4000 -0.3633 10 6 0.2035 -2.3796 -1.1796 11 7 -0.3841 -3.5092 -1.5021 12 6 0.0624 -4.6976 -1.0878 13 6 -0.6281 -5.8559 -1.4815 14 6 -0.1852 -7.0795 -1.0675 15 6 0.9520 -7.1647 -0.2549 16 6 1.6055 -6.0386 0.1152 17 7 1.1700 -4.8137 -0.2936 18 6 1.8458 -3.7090 0.0947 19 8 2.8334 -3.7954 0.8020 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1917 -1.4404 -1.5375 22 1 -1.5016 -5.7794 -2.1120 23 1 -0.7093 -7.9760 -1.3644 24 1 1.3082 -8.1291 0.0759 25 1 2.4821 -6.1116 0.7417 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621417.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:18 Heat of formation + Delta-G solvation = 26.538877 kcal Electronic energy + Delta-G solvation = -13736.442655 eV Core-core repulsion = 11294.467220 eV Total energy + Delta-G solvation = -2441.975434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79779 -37.01004 -35.96191 -34.14221 -32.58922 -30.25002 -29.01753 -25.89560 -23.30727 -22.86719 -21.71914 -18.74957 -17.25523 -16.78780 -16.32139 -15.29049 -14.97097 -14.52840 -14.37056 -13.43123 -13.31095 -12.46635 -12.18710 -12.03733 -11.57998 -11.34372 -11.27163 -10.97614 -10.86563 -10.69643 -9.68902 -9.51794 -9.01834 -8.56848 -8.22293 -7.36448 -6.90659 -4.31416 1.38326 1.80304 2.83137 2.85985 2.89557 3.44701 3.54747 3.63953 3.72105 4.36752 5.30925 5.40977 5.47073 5.65674 5.77267 5.89560 6.12926 6.58506 6.63304 6.74727 6.93251 7.02514 7.06743 7.34418 7.73556 7.85087 7.97579 8.16529 8.27477 9.08141 9.46984 9.60400 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.056099 B = 0.009148 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.994781 B = 3059.923033 C = 3488.946702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.056 3.944 3 Si 0.932 3.068 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.346 4.346 8 H 0.098 0.902 9 C -0.029 4.029 10 C -0.017 4.017 11 N -0.458 5.458 12 C 0.154 3.846 13 C -0.050 4.050 14 C -0.171 4.171 15 C -0.167 4.167 16 C 0.061 3.939 17 N -0.424 5.424 18 C 0.475 3.525 19 O -0.566 6.566 20 H 0.296 0.704 21 H 0.160 0.840 22 H 0.133 0.867 23 H 0.119 0.881 24 H 0.128 0.872 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -3.341 -1.597 3.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.168 4.168 3 Si 0.754 3.246 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.375 4.375 8 H 0.116 0.884 9 C -0.039 4.039 10 C -0.173 4.173 11 N -0.174 5.174 12 C -0.080 4.080 13 C -0.070 4.070 14 C -0.195 4.195 15 C -0.190 4.190 16 C -0.058 4.058 17 N -0.136 5.136 18 C 0.277 3.723 19 O -0.449 6.449 20 H 0.107 0.893 21 H 0.177 0.823 22 H 0.151 0.849 23 H 0.137 0.863 24 H 0.146 0.854 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.768 -3.003 -1.684 3.528 hybrid contribution 0.873 0.617 0.651 1.252 sum 0.104 -2.386 -1.032 2.602 Atomic orbital electron populations 1.69821 1.07970 1.31213 1.28042 1.26280 0.95154 1.02531 0.92796 0.85935 0.79969 0.77919 0.80788 1.18031 1.19568 1.18233 1.19625 0.98349 0.89927 1.29620 0.88385 1.20576 0.96565 0.90663 0.96052 1.22525 0.98317 0.94421 1.02013 1.67594 1.30044 0.96795 1.22968 1.19022 0.91874 0.93872 1.03270 1.20563 0.98446 0.89627 0.98359 1.20632 0.98981 0.96959 1.02885 1.20410 0.98377 0.96827 1.03352 1.21725 0.99801 0.84475 0.99826 1.43114 1.24141 1.07080 1.39237 1.19349 0.85197 0.84568 0.83221 1.90687 1.27312 1.86188 1.40717 0.89276 0.82290 0.84895 0.86321 0.85440 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.59 10.93 55.55 0.61 -16.98 15 2 C 0.06 1.27 5.18 -17.30 -0.09 1.18 15 3 Si 0.93 16.92 29.60 -169.99 -5.03 11.89 15 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 7 C -0.35 -8.88 8.83 -38.13 -0.34 -9.22 15 8 H 0.10 2.48 7.80 -52.49 -0.41 2.07 15 9 C -0.03 -0.79 5.76 -104.35 -0.60 -1.39 15 10 C -0.02 -0.46 9.97 -16.63 -0.17 -0.62 15 11 N -0.46 -11.54 10.19 -11.72 -0.12 -11.66 15 12 C 0.15 3.64 7.34 -155.64 -1.14 2.50 15 13 C -0.05 -0.97 9.93 -39.35 -0.39 -1.36 15 14 C -0.17 -2.86 10.08 -39.51 -0.40 -3.26 15 15 C -0.17 -2.83 10.00 -39.94 -0.40 -3.23 15 16 C 0.06 1.24 10.08 -16.61 -0.17 1.08 15 17 N -0.42 -10.28 2.77 -63.01 -0.17 -10.45 15 18 C 0.48 12.80 7.58 -12.48 -0.09 12.71 15 19 O -0.57 -15.87 16.24 5.11 0.08 -15.79 15 20 H 0.30 6.13 8.30 -40.82 -0.34 5.79 15 21 H 0.16 4.12 6.17 -52.49 -0.32 3.80 15 22 H 0.13 2.26 8.06 -52.48 -0.42 1.84 15 23 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 24 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.15 2.95 7.33 -52.49 -0.38 2.56 15 LS Contribution 229.56 15.07 3.46 3.46 Total: -1.00 -28.99 229.56 -6.48 -35.47 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -1.52 Total: 5.67 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.79 Total: -1.61 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.31 Total: -39.09 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.99 -6.48 -35.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621417.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.006 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds