Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48497 * 109.46947 * 239.99912 * 3 2 1 5 5 H 1.48500 * 109.46813 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47121 * 119.99628 * 3 2 1 7 7 C 1.40136 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00569 * 195.24061 * 7 2 1 9 9 C 1.40436 * 119.99686 * 15.24028 * 7 2 1 10 10 C 1.40539 * 120.72010 * 25.17558 * 9 7 2 11 11 C 1.38128 * 120.42225 * 180.02562 * 10 9 7 12 12 C 1.37702 * 121.79698 * 359.92606 * 11 10 9 13 13 C 1.40592 * 120.81048 * 0.05212 * 12 11 10 14 14 C 1.40562 * 121.13005 * 179.97438 * 13 12 11 15 15 C 1.36252 * 119.80760 * 180.02562 * 14 13 12 16 16 C 1.39325 * 120.91037 * 359.96140 * 15 14 13 17 17 F 1.35097 * 119.67878 * 180.02562 * 16 15 14 18 18 C 1.37972 * 120.64835 * 0.02562 * 16 15 14 19 19 C 1.39467 * 119.54001 * 0.02562 * 18 16 15 20 20 H 0.96995 * 120.00232 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.79220 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.09644 * 179.97438 * 11 10 9 23 23 H 1.08001 * 119.59264 * 180.32277 * 12 11 10 24 24 H 1.07999 * 120.09378 * 359.97438 * 14 13 12 25 25 H 1.08006 * 119.54691 * 179.97438 * 15 14 13 26 26 H 1.07996 * 120.23069 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0082 -1.2136 0.0005 8 1 3.0597 -1.2300 0.2464 9 6 1.3430 -2.4085 -0.3186 10 6 0.1897 -2.3958 -1.1217 11 6 -0.4600 -3.5748 -1.4313 12 6 -0.0098 -4.7931 -0.9738 13 6 1.1379 -4.8798 -0.1664 14 6 1.6030 -6.1197 0.3047 15 6 2.7180 -6.1724 1.0860 16 6 3.4087 -5.0114 1.4266 17 9 4.5118 -5.0926 2.2024 18 6 2.9773 -3.7795 0.9795 19 6 1.8379 -3.6989 0.1793 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1911 -1.4583 -1.4991 22 1 -1.3447 -3.5401 -2.0498 23 1 -0.5425 -5.6935 -1.2421 24 1 1.0775 -7.0279 0.0488 25 1 3.0714 -7.1274 1.4460 26 1 3.5181 -2.8839 1.2473 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238622518.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = -35.687137 kcal Electronic energy + Delta-G solvation = -13434.706037 eV Core-core repulsion = 10970.112319 eV Total energy + Delta-G solvation = -2464.593719 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.63656 -40.40202 -37.03731 -35.38446 -33.11638 -30.51054 -30.09075 -27.11392 -24.11295 -23.31057 -22.39298 -19.34048 -18.60217 -17.74971 -17.36029 -16.71105 -16.36566 -15.74869 -15.28786 -14.76746 -14.40372 -14.10333 -13.91466 -13.58623 -13.29032 -12.97930 -12.80787 -12.43652 -12.16878 -11.62409 -11.42304 -11.30090 -11.15342 -10.37456 -9.19002 -8.87843 -8.63232 -6.36147 -0.06087 0.41554 1.20822 1.36451 1.48848 1.61453 2.12239 2.29500 2.79904 3.54685 3.70464 3.98335 4.10647 4.42753 4.50276 4.58811 4.80859 4.91817 5.04588 5.13416 5.33602 5.37873 5.47914 5.54213 5.76947 5.95926 6.09422 6.21564 6.29574 6.58072 6.70952 6.87940 8.11134 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.029410 B = 0.010854 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.835138 B = 2579.135706 C = 3459.270570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.455 4.455 8 H 0.088 0.912 9 C 0.094 3.906 10 C -0.251 4.251 11 C -0.062 4.062 12 C -0.275 4.275 13 C -0.026 4.026 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.014 3.986 17 F -0.156 7.156 18 C -0.113 4.113 19 C -0.129 4.129 20 H 0.297 0.703 21 H 0.106 0.894 22 H 0.111 0.889 23 H 0.123 0.877 24 H 0.155 0.845 25 H 0.154 0.846 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -3.167 0.096 3.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.187 4.187 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.106 0.894 9 C 0.091 3.909 10 C -0.271 4.271 11 C -0.080 4.080 12 C -0.294 4.294 13 C -0.027 4.027 14 C -0.135 4.135 15 C -0.154 4.154 16 C -0.005 4.005 17 F -0.135 7.135 18 C -0.132 4.132 19 C -0.129 4.129 20 H 0.109 0.891 21 H 0.124 0.876 22 H 0.129 0.871 23 H 0.141 0.859 24 H 0.172 0.828 25 H 0.172 0.828 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.933 -3.011 0.145 3.581 hybrid contribution 0.291 0.885 0.165 0.946 sum 2.225 -2.126 0.310 3.092 Atomic orbital electron populations 1.69822 1.09282 1.31664 1.30870 1.26974 0.95623 1.04923 0.91146 0.85126 0.78830 0.74772 0.80418 1.18094 1.18608 1.18101 1.19901 0.97884 0.91824 1.38522 0.89423 1.18929 0.92328 0.90850 0.88757 1.21088 1.01973 0.97341 1.06727 1.20850 0.97574 0.92785 0.96806 1.20613 1.01189 0.97349 1.10218 1.18211 0.95246 0.92578 0.96617 1.21040 0.96802 0.97039 0.98578 1.20847 0.96668 0.97285 1.00612 1.17638 0.88038 0.94894 0.99914 1.91377 1.51450 1.97232 1.73451 1.21067 0.96985 0.96473 0.98708 1.19218 0.97548 0.94279 1.01880 0.89150 0.87580 0.87076 0.85882 0.82756 0.82806 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.08 10.86 21.86 0.24 -38.84 15 2 C 0.03 1.54 5.20 85.32 0.44 1.98 15 3 Si 0.99 35.46 29.59 68.60 2.03 37.49 15 4 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 5 H -0.26 -8.79 7.11 99.48 0.71 -8.08 15 6 H -0.26 -8.97 7.11 99.48 0.71 -8.26 15 7 C -0.45 -23.30 8.51 23.27 0.20 -23.11 15 8 H 0.09 4.27 6.71 -2.91 -0.02 4.26 15 9 C 0.09 5.02 5.73 -19.91 -0.11 4.91 15 10 C -0.25 -13.05 8.69 22.80 0.20 -12.85 15 11 C -0.06 -2.83 9.92 22.12 0.22 -2.61 15 12 C -0.27 -11.86 9.77 22.72 0.22 -11.64 15 13 C -0.03 -1.18 5.74 -21.32 -0.12 -1.30 15 14 C -0.12 -4.24 9.76 22.37 0.22 -4.02 15 15 C -0.14 -4.77 9.92 22.07 0.22 -4.55 15 16 C 0.01 0.58 7.29 22.47 0.16 0.74 15 17 F -0.16 -6.02 17.25 44.97 0.78 -5.24 15 18 C -0.11 -5.17 9.43 22.50 0.21 -4.96 15 19 C -0.13 -6.37 5.90 -19.89 -0.12 -6.49 15 20 H 0.30 13.03 8.29 -92.71 -0.77 12.26 15 21 H 0.11 5.67 6.12 -2.91 -0.02 5.66 15 22 H 0.11 4.42 8.06 -2.91 -0.02 4.40 15 23 H 0.12 4.46 8.06 -2.91 -0.02 4.44 15 24 H 0.15 4.40 8.06 -2.91 -0.02 4.38 15 25 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 26 H 0.12 5.53 6.65 -2.91 -0.02 5.51 15 Total: -1.00 -56.09 234.88 5.98 -50.10 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.20 Total: 20.39 kcal Atomic # 6 Polarization: -65.64 SS G_CDS: 1.74 Total: -63.90 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.24 Total: -38.84 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.78 Total: -5.24 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -56.09 5.98 -50.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622518.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.413 kcal (2) G-P(sol) polarization free energy of solvation -56.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds