Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48494 * 109.46974 * 240.00083 * 3 2 1 5 5 H 1.48501 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46862 * 119.99929 * 3 2 1 7 7 C 1.40124 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99893 * 159.85614 * 7 2 1 9 9 C 1.40371 * 120.00186 * 339.85938 * 7 2 1 10 10 C 1.40816 * 120.73072 * 323.62306 * 9 7 2 11 11 F 1.35106 * 119.82413 * 0.02562 * 10 9 7 12 12 C 1.38500 * 120.34629 * 179.78897 * 10 9 7 13 13 C 1.37484 * 121.76670 * 0.50117 * 12 10 9 14 14 C 1.40735 * 120.85367 * 359.47100 * 13 12 10 15 15 C 1.40477 * 121.11954 * 180.25284 * 14 13 12 16 16 C 1.36354 * 119.78069 * 180.02562 * 15 14 13 17 17 C 1.39068 * 120.93139 * 0.02562 * 16 15 14 18 18 C 1.37683 * 120.70311 * 359.96795 * 17 16 15 19 19 C 1.39553 * 119.55804 * 0.02724 * 18 17 16 20 20 H 0.97001 * 120.00619 * 359.97438 * 1 2 3 21 21 H 1.08005 * 119.12102 * 180.27497 * 12 10 9 22 22 H 1.08002 * 119.57708 * 179.76120 * 13 12 10 23 23 H 1.07992 * 120.10616 * 0.02562 * 15 14 13 24 24 H 1.08004 * 119.53231 * 180.02562 * 16 15 14 25 25 H 1.08004 * 119.64729 * 179.97438 * 17 16 15 26 26 H 1.07997 * 120.22096 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2767 2.7464 0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0083 -1.2135 -0.0005 8 1 3.0388 -1.2420 -0.3227 9 6 1.3709 -2.3922 0.4175 10 6 0.4400 -2.3710 1.4739 11 9 0.1540 -1.2054 2.0942 12 6 -0.1876 -3.5380 1.8770 13 6 0.0773 -4.7466 1.2775 14 6 0.9962 -4.8395 0.2155 15 6 1.2671 -6.0705 -0.4045 16 6 2.1629 -6.1292 -1.4308 17 6 2.8163 -4.9850 -1.8757 18 6 2.5728 -3.7635 -1.2891 19 6 1.6605 -3.6748 -0.2367 20 1 -0.4851 0.8400 0.0004 21 1 -0.9015 -3.4983 2.6864 22 1 -0.4298 -5.6354 1.6228 23 1 0.7675 -6.9674 -0.0694 24 1 2.3679 -7.0777 -1.9050 25 1 3.5223 -5.0554 -2.6900 26 1 3.0843 -2.8798 -1.6410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238622640.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = -16.798961 kcal Electronic energy + Delta-G solvation = -13714.378932 eV Core-core repulsion = 11250.604266 eV Total energy + Delta-G solvation = -2463.774666 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.82860 -38.68097 -34.97765 -33.79374 -31.32764 -28.87030 -28.30855 -25.24579 -22.28389 -21.47231 -20.60121 -17.62186 -16.54471 -16.16767 -15.21314 -15.00554 -13.88928 -13.66258 -13.51250 -13.17144 -12.65594 -12.20646 -12.12777 -11.87403 -11.47461 -11.31934 -11.18300 -10.74867 -10.52596 -10.04919 -9.77092 -9.47114 -9.26537 -8.48251 -7.35729 -7.13283 -6.74750 -4.52054 1.71898 2.21509 2.87447 2.97991 3.00839 3.26362 3.77547 4.04123 4.60834 5.39554 5.66874 5.78155 5.84187 6.00042 6.20772 6.28873 6.45433 6.51127 6.76173 6.86597 7.04052 7.10375 7.23804 7.39442 7.54297 7.67216 7.75735 7.89235 8.04811 8.25623 8.45600 8.71066 9.90366 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.034879 B = 0.011684 C = 0.009110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.591219 B = 2395.901435 C = 3072.815449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.429 4.429 8 H 0.092 0.908 9 C 0.100 3.900 10 C -0.034 4.034 11 F -0.149 7.149 12 C -0.078 4.078 13 C -0.252 4.252 14 C -0.005 4.005 15 C -0.150 4.150 16 C -0.115 4.115 17 C -0.187 4.187 18 C -0.064 4.064 19 C -0.097 4.097 20 H 0.290 0.710 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -2.654 -1.021 3.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.455 4.455 8 H 0.110 0.890 9 C 0.095 3.905 10 C -0.055 4.055 11 F -0.128 7.128 12 C -0.097 4.097 13 C -0.271 4.271 14 C -0.005 4.005 15 C -0.168 4.168 16 C -0.133 4.133 17 C -0.205 4.205 18 C -0.082 4.082 19 C -0.097 4.097 20 H 0.102 0.898 21 H 0.117 0.883 22 H 0.118 0.882 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.122 -2.437 -1.017 3.387 hybrid contribution 0.058 0.894 0.098 0.901 sum 2.180 -1.543 -0.919 2.825 Atomic orbital electron populations 1.69730 1.08098 1.30789 1.28211 1.25991 0.94774 1.01754 0.92686 0.86198 0.80173 0.79400 0.80232 1.18678 1.19975 1.18391 1.19414 0.99169 0.91158 1.35790 0.89028 1.18493 0.91112 0.91429 0.89418 1.17382 1.08239 0.80677 0.99190 1.91286 1.92946 1.47326 1.81243 1.20462 0.97880 0.92388 0.98966 1.20070 1.07293 0.96265 1.03480 1.17816 0.95385 0.92266 0.94995 1.20752 1.00956 0.96550 0.98529 1.20517 0.97790 0.97417 0.97567 1.20728 1.03883 0.93090 1.02829 1.21056 0.95667 0.96868 0.94599 1.18999 1.00186 0.92818 0.97723 0.89850 0.88349 0.88165 0.87464 0.87924 0.87728 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.28 11.12 55.56 0.62 -18.67 15 2 C 0.07 1.77 4.51 -17.29 -0.08 1.69 15 3 Si 0.92 18.19 29.61 -169.99 -5.03 13.16 15 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 5 H -0.28 -5.32 7.11 56.52 0.40 -4.91 15 6 H -0.26 -5.17 7.11 56.52 0.40 -4.76 15 7 C -0.43 -10.95 8.13 -38.07 -0.31 -11.26 15 8 H 0.09 2.17 7.19 -52.49 -0.38 1.79 15 9 C 0.10 2.63 5.56 -104.63 -0.58 2.05 15 10 C -0.03 -0.91 6.70 -38.51 -0.26 -1.16 15 11 F -0.15 -4.06 14.25 2.25 0.03 -4.03 15 12 C -0.08 -1.85 9.89 -39.76 -0.39 -2.25 15 13 C -0.25 -5.69 9.76 -38.91 -0.38 -6.07 15 14 C 0.00 -0.10 5.74 -106.86 -0.61 -0.72 15 15 C -0.15 -2.98 9.77 -39.42 -0.38 -3.36 15 16 C -0.11 -2.11 9.95 -39.95 -0.40 -2.51 15 17 C -0.19 -3.56 10.02 -39.48 -0.40 -3.96 15 18 C -0.06 -1.38 9.46 -39.29 -0.37 -1.76 15 19 C -0.10 -2.37 5.90 -104.67 -0.62 -2.98 15 20 H 0.29 6.80 8.30 -40.82 -0.34 6.46 15 21 H 0.10 2.10 8.06 -52.48 -0.42 1.67 15 22 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 23 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 24 H 0.10 1.55 8.06 -52.48 -0.42 1.12 15 25 H 0.10 1.68 8.06 -52.48 -0.42 1.25 15 26 H 0.12 2.44 6.87 -52.49 -0.36 2.08 15 LS Contribution 234.33 15.07 3.53 3.53 Total: -1.00 -27.58 234.33 -7.62 -35.20 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -1.99 Total: 3.08 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -4.78 Total: -32.28 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.62 Total: -18.67 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.03 Total: -4.03 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.58 -7.62 -35.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622640.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.403 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds