Wall clock time and date at job start Mon Mar 30 2020 02:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48494 * 109.46974 * 240.00083 * 3 2 1 5 5 H 1.48501 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46862 * 119.99929 * 3 2 1 7 7 C 1.40124 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99893 * 159.85614 * 7 2 1 9 9 C 1.40371 * 120.00186 * 339.85938 * 7 2 1 10 10 C 1.40816 * 120.73072 * 323.62306 * 9 7 2 11 11 F 1.35106 * 119.82413 * 0.02562 * 10 9 7 12 12 C 1.38500 * 120.34629 * 179.78897 * 10 9 7 13 13 C 1.37484 * 121.76670 * 0.50117 * 12 10 9 14 14 C 1.40735 * 120.85367 * 359.47100 * 13 12 10 15 15 C 1.40477 * 121.11954 * 180.25284 * 14 13 12 16 16 C 1.36354 * 119.78069 * 180.02562 * 15 14 13 17 17 C 1.39068 * 120.93139 * 0.02562 * 16 15 14 18 18 C 1.37683 * 120.70311 * 359.96795 * 17 16 15 19 19 C 1.39553 * 119.55804 * 0.02724 * 18 17 16 20 20 H 0.97001 * 120.00619 * 359.97438 * 1 2 3 21 21 H 1.08005 * 119.12102 * 180.27497 * 12 10 9 22 22 H 1.08002 * 119.57708 * 179.76120 * 13 12 10 23 23 H 1.07992 * 120.10616 * 0.02562 * 15 14 13 24 24 H 1.08004 * 119.53231 * 180.02562 * 16 15 14 25 25 H 1.08004 * 119.64729 * 179.97438 * 17 16 15 26 26 H 1.07997 * 120.22096 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2767 2.7464 0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0083 -1.2135 -0.0005 8 1 3.0388 -1.2420 -0.3227 9 6 1.3709 -2.3922 0.4175 10 6 0.4400 -2.3710 1.4739 11 9 0.1540 -1.2054 2.0942 12 6 -0.1876 -3.5380 1.8770 13 6 0.0773 -4.7466 1.2775 14 6 0.9962 -4.8395 0.2155 15 6 1.2671 -6.0705 -0.4045 16 6 2.1629 -6.1292 -1.4308 17 6 2.8163 -4.9850 -1.8757 18 6 2.5728 -3.7635 -1.2891 19 6 1.6605 -3.6748 -0.2367 20 1 -0.4851 0.8400 0.0004 21 1 -0.9015 -3.4983 2.6864 22 1 -0.4298 -5.6354 1.6228 23 1 0.7675 -6.9674 -0.0694 24 1 2.3679 -7.0777 -1.9050 25 1 3.5223 -5.0554 -2.6900 26 1 3.0843 -2.8798 -1.6410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238622640.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:39 Heat of formation + Delta-G solvation = -30.568989 kcal Electronic energy + Delta-G solvation = -13714.976045 eV Core-core repulsion = 11250.604266 eV Total energy + Delta-G solvation = -2464.371779 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.82142 -40.36875 -36.69842 -35.56983 -33.06430 -30.58336 -30.01921 -27.07264 -23.97619 -23.20762 -22.33757 -19.41056 -18.34915 -17.88679 -16.97703 -16.68868 -15.62571 -15.60226 -15.17633 -14.90031 -14.30685 -13.95040 -13.84212 -13.56495 -13.21813 -12.99225 -12.91315 -12.37458 -12.10744 -11.70148 -11.48435 -11.22227 -11.04240 -10.20505 -9.11083 -8.92214 -8.51860 -6.41214 0.02687 0.49343 1.24659 1.34756 1.47226 1.57819 2.12688 2.31197 2.84701 3.60991 4.08042 4.13210 4.30545 4.33088 4.54747 4.70219 4.78565 4.83076 5.00491 5.16883 5.35894 5.40797 5.55746 5.74405 5.79214 5.93317 5.99806 6.10663 6.33921 6.46403 6.63617 6.85749 8.14992 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.034879 B = 0.011684 C = 0.009110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.591219 B = 2395.901435 C = 3072.815449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.096 0.904 9 C 0.070 3.930 10 C -0.078 4.078 11 F -0.164 7.164 12 C -0.096 4.096 13 C -0.237 4.237 14 C -0.036 4.036 15 C -0.145 4.145 16 C -0.110 4.110 17 C -0.164 4.164 18 C -0.093 4.093 19 C -0.121 4.121 20 H 0.294 0.706 21 H 0.115 0.885 22 H 0.134 0.866 23 H 0.140 0.860 24 H 0.150 0.850 25 H 0.142 0.858 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -4.747 -2.242 6.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.171 1.171 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.114 0.886 9 C 0.066 3.934 10 C -0.099 4.099 11 F -0.143 7.143 12 C -0.115 4.115 13 C -0.257 4.257 14 C -0.036 4.036 15 C -0.163 4.163 16 C -0.128 4.128 17 C -0.182 4.182 18 C -0.111 4.111 19 C -0.122 4.122 20 H 0.105 0.895 21 H 0.134 0.866 22 H 0.151 0.849 23 H 0.158 0.842 24 H 0.168 0.832 25 H 0.160 0.840 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.115 -4.554 -2.244 5.957 hybrid contribution -0.221 1.208 0.385 1.287 sum 2.895 -3.346 -1.860 4.799 Atomic orbital electron populations 1.69793 1.09703 1.31735 1.30256 1.26896 0.95386 1.04977 0.91513 0.85178 0.78862 0.74975 0.80461 1.17075 1.19148 1.18632 1.19647 0.99618 0.92043 1.37817 0.88615 1.18914 0.91732 0.92925 0.89800 1.17829 1.10351 0.81103 1.00579 1.91219 1.93233 1.48291 1.81569 1.20712 0.98568 0.92256 0.99951 1.20538 1.06093 0.96718 1.02309 1.18237 0.96036 0.93384 0.95946 1.21159 1.00824 0.96151 0.98179 1.21062 0.96121 0.99045 0.96569 1.21245 1.02796 0.92008 1.02141 1.21213 0.96343 0.98492 0.95018 1.19362 1.01318 0.92777 0.98706 0.89513 0.86649 0.84859 0.84184 0.83225 0.83977 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.88 11.12 21.86 0.24 -42.64 15 2 C 0.03 1.63 4.51 85.31 0.38 2.01 15 3 Si 0.99 38.28 29.61 68.60 2.03 40.31 15 4 H -0.25 -8.87 7.11 99.48 0.71 -8.17 15 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 15 7 C -0.46 -24.82 8.13 23.25 0.19 -24.63 15 8 H 0.10 4.76 7.19 -2.91 -0.02 4.74 15 9 C 0.07 3.86 5.56 -19.87 -0.11 3.75 15 10 C -0.08 -4.33 6.70 22.96 0.15 -4.18 15 11 F -0.16 -9.45 14.25 44.97 0.64 -8.81 15 12 C -0.10 -4.66 9.89 22.15 0.22 -4.44 15 13 C -0.24 -10.45 9.76 22.70 0.22 -10.23 15 14 C -0.04 -1.61 5.74 -21.32 -0.12 -1.73 15 15 C -0.15 -5.18 9.77 22.38 0.22 -4.96 15 16 C -0.11 -3.47 9.95 22.03 0.22 -3.26 15 17 C -0.16 -5.60 10.02 22.34 0.22 -5.38 15 18 C -0.09 -3.94 9.46 22.46 0.21 -3.73 15 19 C -0.12 -5.98 5.90 -19.90 -0.12 -6.09 15 20 H 0.29 14.45 8.30 -92.71 -0.77 13.68 15 21 H 0.12 4.99 8.06 -2.91 -0.02 4.97 15 22 H 0.13 4.85 8.06 -2.91 -0.02 4.83 15 23 H 0.14 4.05 8.06 -2.91 -0.02 4.02 15 24 H 0.15 3.41 8.06 -2.91 -0.02 3.38 15 25 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 26 H 0.12 4.89 6.87 -2.91 -0.02 4.87 15 Total: -1.00 -62.32 234.33 5.80 -56.52 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.19 Total: 17.49 kcal Atomic # 6 Polarization: -64.56 SS G_CDS: 1.69 Total: -62.87 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.24 Total: -42.64 kcal Atomic # 9 Polarization: -9.45 SS G_CDS: 0.64 Total: -8.81 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -62.32 5.80 -56.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622640.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.947 kcal (2) G-P(sol) polarization free energy of solvation -62.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds