Wall clock time and date at job start Mon Mar 30 2020 02:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86793 * 120.00356 * 2 1 4 4 H 1.48505 * 109.47061 * 275.41257 * 3 2 1 5 5 H 1.48499 * 109.47343 * 35.40947 * 3 2 1 6 6 H 1.48501 * 109.47366 * 155.41635 * 3 2 1 7 7 C 1.40035 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00374 * 341.67963 * 7 2 1 9 9 C 1.41121 * 119.99764 * 161.67548 * 7 2 1 10 10 C 1.41578 * 119.89036 * 150.25230 * 9 7 2 11 11 C 1.35296 * 120.69662 * 180.23865 * 10 9 7 12 12 C 1.41103 * 120.27868 * 359.53962 * 11 10 9 13 13 N 1.33631 * 120.63736 * 180.23321 * 12 11 10 14 14 C 1.31955 * 119.78794 * 180.02562 * 13 12 11 15 15 O 1.35511 * 119.71148 * 180.02562 * 14 13 12 16 16 C 1.40458 * 120.57471 * 0.02562 * 14 13 12 17 17 N 1.31138 * 120.57482 * 359.97438 * 16 14 13 18 18 C 1.34114 * 119.82107 * 0.02562 * 17 16 14 19 19 C 1.39924 * 120.74349 * 179.97438 * 18 17 16 20 20 H 0.97003 * 119.99559 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.64872 * 0.03651 * 10 9 7 22 22 H 1.08008 * 119.86140 * 179.81490 * 11 10 9 23 23 H 0.96702 * 113.99964 * 270.00008 * 15 14 13 24 24 H 1.08003 * 119.71286 * 179.97438 * 16 14 13 25 25 H 1.07996 * 120.28111 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 2.3750 2.1123 -1.3939 5 1 1.5012 2.6169 0.8112 6 1 3.5920 1.4097 0.5825 7 6 2.0079 -1.2128 0.0005 8 1 1.5089 -2.1242 0.2949 9 6 3.3654 -1.2441 -0.3837 10 6 4.2333 -2.2158 0.1703 11 6 5.5387 -2.2576 -0.1828 12 6 6.0522 -1.3353 -1.1192 13 7 7.3393 -1.3730 -1.4766 14 6 7.8019 -0.5021 -2.3534 15 8 9.1073 -0.5421 -2.7151 16 6 6.9532 0.4659 -2.9149 17 7 5.6871 0.5196 -2.5774 18 6 5.1963 -0.3561 -1.6880 19 6 3.8487 -0.3160 -1.3136 20 1 -0.4849 0.8401 0.0004 21 1 3.8499 -2.9292 0.8848 22 1 6.1894 -3.0028 0.2504 23 1 9.6853 0.0021 -2.1630 24 1 7.3467 1.1722 -3.6310 25 1 3.1872 0.4243 -1.7387 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258053737.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:07 Heat of formation + Delta-G solvation = -10.957579 kcal Electronic energy + Delta-G solvation = -13535.159015 eV Core-core repulsion = 11091.557612 eV Total energy + Delta-G solvation = -2443.601403 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.99694 -39.12494 -37.55101 -35.74499 -34.97559 -31.75996 -31.29894 -27.47790 -25.71634 -23.96733 -23.23435 -20.51735 -19.44094 -18.97080 -18.31623 -17.20477 -16.85229 -16.07664 -15.51760 -15.07199 -14.97087 -14.55296 -14.45719 -13.55075 -12.93728 -12.83859 -12.69189 -12.54928 -12.48841 -12.22039 -11.95080 -11.80005 -11.17288 -9.86181 -9.67348 -9.30577 -9.14620 -6.67788 -0.47923 -0.16281 1.11315 1.24748 1.28552 1.43096 1.87983 2.04528 2.60085 2.76642 3.35449 3.44601 3.58787 3.91528 4.13407 4.44178 4.49354 4.67562 4.78076 5.00977 5.22131 5.34846 5.50730 5.61453 5.83903 6.06683 6.36111 6.42707 6.58680 6.81840 6.98056 7.89031 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.046253 B = 0.009826 C = 0.008501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.224166 B = 2848.765134 C = 3292.786429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.060 3.940 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.091 0.909 9 C 0.083 3.917 10 C -0.124 4.124 11 C -0.073 4.073 12 C 0.008 3.992 13 N -0.447 5.447 14 C 0.202 3.798 15 O -0.476 6.476 16 C 0.090 3.910 17 N -0.482 5.482 18 C 0.109 3.891 19 C -0.285 4.285 20 H 0.304 0.696 21 H 0.148 0.852 22 H 0.149 0.851 23 H 0.413 0.587 24 H 0.203 0.797 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 2.174 -0.193 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.161 4.161 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.109 0.891 9 C 0.078 3.922 10 C -0.144 4.144 11 C -0.093 4.093 12 C -0.121 4.121 13 N -0.171 5.171 14 C 0.007 3.993 15 O -0.283 6.283 16 C -0.088 4.088 17 N -0.198 5.198 18 C -0.011 4.011 19 C -0.307 4.307 20 H 0.115 0.885 21 H 0.166 0.834 22 H 0.167 0.833 23 H 0.273 0.727 24 H 0.220 0.780 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.798 1.828 -0.530 9.001 hybrid contribution 0.171 0.941 0.174 0.972 sum 8.969 2.770 -0.356 9.394 Atomic orbital electron populations 1.69641 1.08864 1.32541 1.31702 1.26760 0.95262 1.03900 0.90175 0.85501 0.79452 0.77373 0.79167 1.19703 1.19396 1.18561 1.19793 0.93518 0.96458 1.35971 0.89097 1.17904 0.93339 0.91438 0.89517 1.21396 0.92527 1.00034 1.00464 1.20691 0.95774 0.97257 0.95560 1.19271 0.88873 1.00524 1.03424 1.67801 1.14613 1.22988 1.11738 1.20200 0.87678 0.94717 0.96656 1.84730 1.13498 1.73200 1.56917 1.24454 0.89203 0.96723 0.98405 1.68748 1.14252 1.23732 1.13108 1.19410 0.95276 0.92682 0.93696 1.20531 0.93375 1.08792 1.08031 0.88485 0.83425 0.83324 0.72721 0.78019 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.55 13.93 21.84 0.30 -39.25 15 2 C 0.06 2.95 5.39 85.29 0.46 3.41 15 3 Si 0.96 41.96 24.52 68.60 1.68 43.64 15 4 H -0.27 -12.13 6.71 99.48 0.67 -11.47 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.26 -12.04 6.87 99.48 0.68 -11.36 15 7 C -0.43 -21.36 9.54 23.41 0.22 -21.14 15 8 H 0.09 4.58 8.06 -2.91 -0.02 4.56 15 9 C 0.08 3.94 5.11 -21.32 -0.11 3.83 15 10 C -0.12 -5.01 9.67 22.41 0.22 -4.80 15 11 C -0.07 -2.88 9.93 22.29 0.22 -2.66 15 12 C 0.01 0.35 6.60 40.49 0.27 0.61 15 13 N -0.45 -18.07 10.47 -300.78 -3.15 -21.22 15 14 C 0.20 7.02 7.77 85.22 0.66 7.68 15 15 O -0.48 -12.66 13.56 -88.13 -1.19 -13.86 15 16 C 0.09 3.10 11.17 85.34 0.95 4.05 15 17 N -0.48 -20.97 10.45 -187.71 -1.96 -22.93 15 18 C 0.11 5.16 6.58 40.12 0.26 5.43 15 19 C -0.29 -14.11 7.13 23.10 0.16 -13.95 15 20 H 0.30 13.36 8.30 -92.71 -0.77 12.59 15 21 H 0.15 5.06 8.06 -2.91 -0.02 5.04 15 22 H 0.15 4.85 8.06 -2.91 -0.02 4.83 15 23 H 0.41 6.31 9.06 -74.06 -0.67 5.64 15 24 H 0.20 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.10 5.20 4.72 -2.91 -0.01 5.18 15 Total: -1.00 -60.64 226.80 -0.49 -61.13 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.51 Total: 10.01 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 3.32 Total: -17.53 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -4.81 Total: -83.40 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.19 Total: -13.86 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Total: -60.64 -0.49 -61.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258053737.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.172 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds