Wall clock time and date at job start Mon Mar 30 2020 02:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 116.99817 * 2 1 4 4 O 1.20825 * 120.00245 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47122 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.62455 * 179.97438 * 6 5 3 8 8 H 1.08004 * 120.00202 * 245.35295 * 7 6 5 9 9 C 1.37887 * 120.00061 * 65.08650 * 7 6 5 10 10 N 1.31506 * 119.99398 * 355.38402 * 9 7 6 11 11 Si 1.86791 * 120.00136 * 175.38729 * 9 7 6 12 12 H 1.48494 * 109.47230 * 59.99416 * 11 9 7 13 13 H 1.48498 * 109.47060 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47078 * 299.99560 * 11 9 7 15 15 O 1.43366 * 109.62935 * 300.38928 * 6 5 3 16 16 C 1.43895 * 107.44845 * 120.35832 * 15 6 5 17 17 C 1.54915 * 103.01882 * 21.54294 * 16 15 6 18 18 O 1.43752 * 109.63062 * 59.60339 * 6 5 3 19 19 H 1.08998 * 109.47537 * 60.00144 * 1 2 3 20 20 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46805 * 299.99625 * 1 2 3 22 22 H 1.09002 * 109.47110 * 59.99123 * 5 3 2 23 23 H 1.09005 * 109.46492 * 299.99472 * 5 3 2 24 24 H 0.97002 * 119.99968 * 180.02562 * 10 9 7 25 25 H 1.08996 * 110.76660 * 263.14154 * 16 15 6 26 26 H 1.09001 * 110.82761 * 139.96344 * 16 15 6 27 27 H 1.09000 * 110.97843 * 206.28276 * 17 16 15 28 28 H 1.08996 * 110.98066 * 82.49153 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 6 5.5047 2.8251 -0.0011 8 1 6.0225 3.2446 0.8489 9 6 6.2209 2.3604 -1.0839 10 7 5.5984 1.7628 -2.0762 11 14 8.0750 2.5796 -1.1410 12 1 8.6912 1.8887 0.0200 13 1 8.6037 1.9974 -2.4007 14 1 8.4042 4.0267 -1.0876 15 8 3.4810 3.3974 -1.1659 16 6 2.6436 4.4777 -0.7161 17 6 3.1538 4.7388 0.7231 18 8 3.4804 3.3998 1.1668 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 3.9557 0.7809 -0.8908 23 1 3.9563 0.7807 0.8893 24 1 6.1022 1.4355 -2.8378 25 1 1.5963 4.1759 -0.7048 26 1 2.7819 5.3608 -1.3399 27 1 2.3695 5.1745 1.3421 28 1 4.0396 5.3738 0.7140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258064541.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:21 Heat of formation + Delta-G solvation = -189.643778 kcal Electronic energy + Delta-G solvation = -15641.988323 eV Core-core repulsion = 12851.036835 eV Total energy + Delta-G solvation = -2790.951489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.58341 -40.37065 -37.21946 -35.39475 -35.04699 -32.45131 -29.67979 -28.32516 -27.49065 -23.75773 -23.37091 -21.50229 -19.24234 -18.29455 -17.73087 -17.51733 -17.05368 -16.59415 -16.49608 -15.73098 -14.85617 -14.58660 -14.30219 -13.94974 -13.65684 -13.31117 -13.00268 -12.81926 -12.79228 -12.59960 -12.30010 -12.20572 -11.87521 -11.68529 -11.26712 -10.78688 -10.52649 -9.94790 -8.18307 -6.43063 1.38643 1.45946 1.47223 1.55810 1.95323 2.40260 2.95127 3.23331 3.63104 4.11290 4.18186 4.34619 4.35422 4.39059 4.47855 4.58480 4.68465 4.71256 4.90218 5.01906 5.37117 5.41576 5.51995 5.70649 6.01607 6.45541 6.94112 7.00259 7.37302 8.85177 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.035296 B = 0.011952 C = 0.010000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.105771 B = 2342.233735 C = 2799.462252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.466 3.534 4 O -0.522 6.522 5 C -0.107 4.107 6 C 0.384 3.616 7 C -0.578 4.578 8 H 0.064 0.936 9 C 0.041 3.959 10 N -0.887 5.887 11 Si 0.968 3.032 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.274 1.274 15 O -0.387 6.387 16 C 0.020 3.980 17 C 0.032 3.968 18 O -0.405 6.405 19 H 0.055 0.945 20 H 0.133 0.867 21 H 0.061 0.939 22 H 0.122 0.878 23 H 0.102 0.898 24 H 0.269 0.731 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 -0.778 2.784 6.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C 0.310 3.690 4 O -0.411 6.411 5 C -0.145 4.145 6 C 0.309 3.691 7 C -0.615 4.615 8 H 0.082 0.918 9 C -0.163 4.163 10 N -0.522 5.522 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.199 1.199 15 O -0.308 6.308 16 C -0.057 4.057 17 C -0.045 4.045 18 O -0.327 6.327 19 H 0.074 0.926 20 H 0.151 0.849 21 H 0.079 0.921 22 H 0.140 0.860 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.156 -0.751 2.604 6.727 hybrid contribution 0.607 0.284 -0.200 0.700 sum -5.549 -0.467 2.404 6.066 Atomic orbital electron populations 1.23480 0.75361 1.05428 1.02141 1.86530 1.24866 1.33331 1.84347 1.24284 0.92525 0.81186 0.70968 1.90481 1.67589 1.36672 1.46321 1.22001 0.85759 1.00757 1.05987 1.20592 0.90433 0.85950 0.72131 1.21624 0.90580 1.44695 1.04596 0.91791 1.25739 1.03491 0.92754 0.94316 1.69996 1.37724 1.36042 1.08483 0.85485 0.78874 0.78608 0.77859 1.19007 1.20308 1.19909 1.88964 1.64354 1.45907 1.31595 1.24020 0.95736 0.90811 0.95117 1.24129 0.99834 0.85268 0.95243 1.88982 1.84098 1.24993 1.34614 0.92577 0.84888 0.92070 0.85985 0.88019 0.92143 0.91543 0.89357 0.86873 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.98 15 2 O -0.37 -14.13 10.57 -51.40 -0.54 -14.68 15 3 C 0.47 21.00 7.66 71.24 0.55 21.54 15 4 O -0.52 -24.50 11.80 31.03 0.37 -24.13 15 5 C -0.11 -5.28 5.15 29.85 0.15 -5.12 15 6 C 0.38 20.35 0.56 29.85 0.02 20.37 15 7 C -0.58 -32.12 8.51 25.60 0.22 -31.90 15 8 H 0.06 3.55 7.82 -2.91 -0.02 3.53 15 9 C 0.04 2.22 5.26 84.66 0.45 2.67 15 10 N -0.89 -49.44 11.00 21.45 0.24 -49.20 15 11 Si 0.97 42.16 29.54 68.60 2.03 44.18 15 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 13 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 15 O -0.39 -21.02 9.49 -119.73 -1.14 -22.15 15 16 C 0.02 0.87 7.16 72.64 0.52 1.39 15 17 C 0.03 1.31 7.90 72.64 0.57 1.88 15 18 O -0.41 -20.24 9.98 -119.73 -1.20 -21.43 15 19 H 0.06 1.54 8.13 -2.39 -0.02 1.52 15 20 H 0.13 2.48 8.14 -2.39 -0.02 2.46 15 21 H 0.06 1.61 8.13 -2.39 -0.02 1.59 15 22 H 0.12 6.47 6.32 -2.39 -0.02 6.45 15 23 H 0.10 4.72 8.14 -2.38 -0.02 4.70 15 24 H 0.27 14.15 8.31 -92.71 -0.77 13.38 15 25 H 0.07 2.91 6.29 -2.39 -0.02 2.89 15 26 H 0.09 3.38 8.14 -2.39 -0.02 3.36 15 27 H 0.11 3.83 8.14 -2.39 -0.02 3.81 15 28 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 Total: -1.00 -65.49 242.19 4.59 -60.90 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.16 Total: 13.70 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 3.67 Total: 12.81 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.24 Total: -49.20 kcal Atomic # 8 Polarization: -79.88 SS G_CDS: -2.51 Total: -82.39 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.49 4.59 -60.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258064541.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.740 kcal (2) G-P(sol) polarization free energy of solvation -65.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds