Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00149 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99801 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.50698 * 109.47084 * 179.97438 * 10 9 7 12 12 C 1.34241 * 126.50557 * 260.02516 * 11 10 9 13 13 N 1.36826 * 109.93001 * 179.97438 * 12 11 10 14 14 H 0.97002 * 125.05866 * 180.02562 * 13 12 11 15 15 C 1.37684 * 109.87633 * 359.97438 * 13 12 11 16 16 C 1.39128 * 133.50273 * 180.02562 * 15 13 12 17 17 C 1.37757 * 119.77594 * 179.97438 * 16 15 13 18 18 C 1.38834 * 120.66312 * 0.02562 * 17 16 15 19 19 C 1.36618 * 120.53162 * 359.97438 * 18 17 16 20 20 C 1.39639 * 119.76563 * 359.70313 * 19 18 17 21 21 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 24 24 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 25 25 H 1.07996 * 125.03350 * 359.97438 * 12 11 10 26 26 H 1.08002 * 120.11494 * 359.95495 * 16 15 13 27 27 H 1.07997 * 119.66637 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.73250 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.12030 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 6 1.0785 -4.8022 -0.0074 12 6 0.7059 -5.5337 1.0548 13 7 -0.1997 -6.4850 0.6715 14 1 -0.6126 -7.1322 1.2644 15 6 -0.4385 -6.3861 -0.6809 16 6 -1.2519 -7.0893 -1.5638 17 6 -1.2747 -6.7427 -2.8968 18 6 -0.4929 -5.6976 -3.3702 19 6 0.3130 -4.9938 -2.5207 20 6 0.3466 -5.3237 -1.1643 21 1 -0.4849 0.8401 0.0004 22 1 0.3554 -2.3880 -0.0016 23 1 2.6811 -3.7119 -0.9007 24 1 2.6878 -3.7173 0.8792 25 1 1.0675 -5.3921 2.0625 26 1 -1.8631 -7.9044 -1.2053 27 1 -1.9064 -7.2901 -3.5807 28 1 -0.5222 -5.4390 -4.4183 29 1 0.9181 -4.1817 -2.8960 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258795688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = 68.220806 kcal Electronic energy + Delta-G solvation = -13526.354093 eV Core-core repulsion = 11222.019217 eV Total energy + Delta-G solvation = -2304.334876 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.87322 -36.60512 -34.66157 -32.10850 -30.47205 -29.04229 -28.48785 -25.15766 -22.57539 -22.34150 -21.41254 -19.04220 -17.58591 -16.81499 -16.00031 -15.14602 -14.58879 -14.08622 -13.83144 -13.49839 -13.17416 -12.98718 -12.79640 -11.93973 -11.47769 -11.34234 -11.15251 -10.86679 -10.72898 -10.40047 -10.03780 -9.70879 -9.21377 -8.79004 -7.88627 -7.29201 -6.81015 -5.66834 -2.95110 1.46861 1.95433 3.06416 3.42550 3.49501 3.53602 3.54975 4.26208 4.69614 5.04924 5.18488 5.31102 5.44252 5.62893 5.68532 5.78535 5.96071 6.13473 6.29964 6.33914 6.36420 6.67030 6.74879 6.89895 6.96024 7.12120 7.24523 7.52378 7.76978 7.84034 8.51808 9.62947 10.23302 10.59462 11.55898 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.007125 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.467019 B = 3928.788109 C = 4273.663420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.220 3.780 11 C -0.154 4.154 12 C 0.048 3.952 13 N -0.600 5.600 14 H 0.411 0.589 15 C 0.091 3.909 16 C -0.139 4.139 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.054 4.054 20 C -0.093 4.093 21 H 0.254 0.746 22 H 0.385 0.615 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.168 0.832 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -14.929 -1.535 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.092 3.908 11 C -0.161 4.161 12 C -0.078 4.078 13 N -0.203 5.203 14 H 0.247 0.753 15 C -0.016 4.016 16 C -0.160 4.160 17 C -0.123 4.123 18 C -0.177 4.177 19 C -0.072 4.072 20 C -0.098 4.098 21 H 0.064 0.936 22 H 0.219 0.781 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.185 0.815 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.164 -14.859 -1.423 14.972 hybrid contribution -0.150 0.671 0.358 0.776 sum -1.314 -14.188 -1.064 14.288 Atomic orbital electron populations 1.69676 1.05108 1.25569 1.57832 1.24729 0.95473 0.97563 1.03254 0.86279 0.78484 0.83682 0.77804 1.21303 1.21778 1.21353 1.19224 0.90997 0.84183 1.42530 0.91216 1.42405 1.06008 0.99416 1.89275 1.18975 0.91006 0.82788 0.98003 1.20746 1.03638 1.00669 0.91072 1.21635 0.94746 0.92092 0.99319 1.41666 1.39992 1.31897 1.06775 0.75348 1.18282 1.00309 0.98903 0.84075 1.19901 1.01624 1.01732 0.92776 1.20710 0.99486 0.97802 0.94266 1.20578 0.99506 0.97972 0.99594 1.20414 0.97447 0.98074 0.91314 1.19160 0.99678 0.97041 0.93876 0.93577 0.78111 0.95676 0.95761 0.81467 0.86881 0.86336 0.86421 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.06 55.49 0.72 -28.38 15 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 15 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 15 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 15 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 15 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 15 9 N -0.73 -19.34 5.59 -61.09 -0.34 -19.68 15 10 C 0.22 4.75 6.79 -5.20 -0.04 4.72 15 11 C -0.15 -2.93 5.68 -102.71 -0.58 -3.51 15 12 C 0.05 0.75 11.73 -16.73 -0.20 0.55 15 13 N -0.60 -8.27 6.07 -10.65 -0.06 -8.33 15 14 H 0.41 4.06 8.96 -40.82 -0.37 3.69 15 15 C 0.09 1.47 7.28 -83.99 -0.61 0.86 15 16 C -0.14 -1.93 10.08 -39.43 -0.40 -2.33 15 17 C -0.10 -1.40 10.01 -39.54 -0.40 -1.79 15 18 C -0.16 -2.35 9.97 -39.95 -0.40 -2.75 15 19 C -0.05 -0.96 10.05 -39.64 -0.40 -1.36 15 20 C -0.09 -1.72 6.35 -105.13 -0.67 -2.39 15 21 H 0.25 7.67 8.31 -40.82 -0.34 7.33 15 22 H 0.39 11.04 7.66 -40.82 -0.31 10.73 15 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.17 2.15 8.06 -52.49 -0.42 1.73 15 26 H 0.11 1.24 8.06 -52.49 -0.42 0.81 15 27 H 0.12 1.24 8.06 -52.49 -0.42 0.81 15 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.12 2.27 8.06 -52.49 -0.42 1.85 15 LS Contribution 258.37 15.07 3.89 3.89 Total: -1.00 -32.92 258.37 -7.93 -40.84 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.18 Total: 9.39 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.93 Total: -15.54 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.32 Total: -56.40 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.92 -7.93 -40.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258795688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.064 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds