Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00149 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99801 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.50698 * 109.47084 * 179.97438 * 10 9 7 12 12 C 1.34241 * 126.50557 * 260.02516 * 11 10 9 13 13 N 1.36826 * 109.93001 * 179.97438 * 12 11 10 14 14 H 0.97002 * 125.05866 * 180.02562 * 13 12 11 15 15 C 1.37684 * 109.87633 * 359.97438 * 13 12 11 16 16 C 1.39128 * 133.50273 * 180.02562 * 15 13 12 17 17 C 1.37757 * 119.77594 * 179.97438 * 16 15 13 18 18 C 1.38834 * 120.66312 * 0.02562 * 17 16 15 19 19 C 1.36618 * 120.53162 * 359.97438 * 18 17 16 20 20 C 1.39639 * 119.76563 * 359.70313 * 19 18 17 21 21 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 24 24 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 25 25 H 1.07996 * 125.03350 * 359.97438 * 12 11 10 26 26 H 1.08002 * 120.11494 * 359.95495 * 16 15 13 27 27 H 1.07997 * 119.66637 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.73250 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.12030 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 6 1.0785 -4.8022 -0.0074 12 6 0.7059 -5.5337 1.0548 13 7 -0.1997 -6.4850 0.6715 14 1 -0.6126 -7.1322 1.2644 15 6 -0.4385 -6.3861 -0.6809 16 6 -1.2519 -7.0893 -1.5638 17 6 -1.2747 -6.7427 -2.8968 18 6 -0.4929 -5.6976 -3.3702 19 6 0.3130 -4.9938 -2.5207 20 6 0.3466 -5.3237 -1.1643 21 1 -0.4849 0.8401 0.0004 22 1 0.3554 -2.3880 -0.0016 23 1 2.6811 -3.7119 -0.9007 24 1 2.6878 -3.7173 0.8792 25 1 1.0675 -5.3921 2.0625 26 1 -1.8631 -7.9044 -1.2053 27 1 -1.9064 -7.2901 -3.5807 28 1 -0.5222 -5.4390 -4.4183 29 1 0.9181 -4.1817 -2.8960 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258795688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = 46.577710 kcal Electronic energy + Delta-G solvation = -13527.292608 eV Core-core repulsion = 11222.019217 eV Total energy + Delta-G solvation = -2305.273391 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.08409 -37.78461 -36.57614 -33.85879 -32.12155 -30.29773 -29.88867 -26.99289 -24.40268 -23.67882 -22.58727 -20.46935 -19.19470 -18.52535 -17.19210 -16.60833 -16.27367 -15.49764 -15.35660 -14.91685 -14.81835 -14.68600 -14.24908 -13.26816 -13.18871 -12.79392 -12.71853 -12.51633 -12.36452 -12.13415 -11.85219 -11.61625 -10.92961 -10.50173 -9.08082 -8.96511 -8.54041 -7.90958 -5.20528 0.27119 0.75957 1.47569 1.51977 1.57761 1.76923 2.31372 2.60291 3.04610 3.40986 3.90132 4.01650 4.21163 4.28767 4.35031 4.50636 4.54081 4.74395 4.90225 4.99420 5.00468 5.13305 5.35603 5.50137 5.63570 5.75130 5.85172 5.92359 6.29482 6.30579 6.81448 7.35695 8.12314 8.38483 9.32422 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.007125 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.467019 B = 3928.788109 C = 4273.663420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.738 5.738 10 C 0.225 3.775 11 C -0.206 4.206 12 C 0.074 3.926 13 N -0.581 5.581 14 H 0.432 0.568 15 C 0.078 3.922 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.153 4.153 19 C -0.094 4.094 20 C -0.126 4.126 21 H 0.250 0.750 22 H 0.371 0.629 23 H 0.014 0.986 24 H 0.035 0.965 25 H 0.198 0.802 26 H 0.151 0.849 27 H 0.158 0.842 28 H 0.137 0.863 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -16.634 -1.155 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.380 5.380 10 C 0.099 3.901 11 C -0.213 4.213 12 C -0.054 4.054 13 N -0.186 5.186 14 H 0.272 0.728 15 C -0.029 4.029 16 C -0.151 4.151 17 C -0.123 4.123 18 C -0.172 4.172 19 C -0.113 4.113 20 C -0.131 4.131 21 H 0.059 0.941 22 H 0.202 0.798 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.214 0.786 26 H 0.169 0.831 27 H 0.176 0.824 28 H 0.155 0.845 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.634 -16.625 -1.035 16.737 hybrid contribution -0.011 1.068 0.210 1.089 sum -1.644 -15.557 -0.825 15.665 Atomic orbital electron populations 1.69856 1.06807 1.26040 1.59627 1.25600 0.96358 1.01165 1.03728 0.85164 0.77136 0.78889 0.78277 1.20428 1.22163 1.20092 1.19683 0.91587 0.85326 1.41213 0.90461 1.42627 1.05458 1.00747 1.89170 1.18937 0.91497 0.82121 0.97578 1.20575 1.05822 1.01843 0.93079 1.21970 0.93202 0.90683 0.99526 1.41606 1.39001 1.31538 1.06436 0.72758 1.18545 1.00587 0.98699 0.85088 1.20390 1.00538 1.01714 0.92495 1.21174 0.99042 0.97069 0.94993 1.20898 0.98411 0.97701 1.00214 1.20433 0.99519 0.99151 0.92175 1.19427 1.00904 0.98576 0.94149 0.94095 0.79797 0.96825 0.94683 0.78568 0.83106 0.82448 0.84498 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.19 13.06 21.65 0.28 -61.91 15 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 15 3 Si 0.98 47.50 29.55 68.60 2.03 49.52 15 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 15 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 15 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 15 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 15 9 N -0.74 -40.57 5.59 -347.19 -1.94 -42.51 15 10 C 0.22 10.05 6.79 85.63 0.58 10.63 15 11 C -0.21 -7.95 5.68 -18.63 -0.11 -8.05 15 12 C 0.07 2.20 11.73 83.00 0.97 3.18 15 13 N -0.58 -14.55 6.07 -187.62 -1.14 -15.69 15 14 H 0.43 6.98 8.96 -92.71 -0.83 6.15 15 15 C 0.08 2.37 7.28 39.03 0.28 2.65 15 16 C -0.13 -3.19 10.08 22.37 0.23 -2.97 15 17 C -0.10 -2.49 10.01 22.30 0.22 -2.26 15 18 C -0.15 -4.48 9.97 22.03 0.22 -4.26 15 19 C -0.09 -3.49 10.05 22.23 0.22 -3.27 15 20 C -0.13 -4.76 6.35 -20.20 -0.13 -4.89 15 21 H 0.25 15.47 8.31 -92.71 -0.77 14.69 15 22 H 0.37 22.15 7.66 -92.71 -0.71 21.44 15 23 H 0.01 0.64 8.14 -2.39 -0.02 0.62 15 24 H 0.04 1.47 8.14 -2.39 -0.02 1.46 15 25 H 0.20 4.53 8.06 -2.91 -0.02 4.51 15 26 H 0.15 2.51 8.06 -2.91 -0.02 2.49 15 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 15 28 H 0.14 3.31 8.06 -2.91 -0.02 3.29 15 29 H 0.10 3.98 8.06 -2.91 -0.02 3.95 15 Total: -1.00 -72.88 258.37 2.66 -70.22 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.37 Total: 27.32 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 3.80 Total: -26.95 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -2.80 Total: -120.11 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -72.88 2.66 -70.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258795688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.793 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds