Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.46957 * 209.99952 * 6 5 4 8 8 F 1.39902 * 109.47187 * 329.99887 * 6 5 4 9 9 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 10 10 C 1.50698 * 109.47011 * 179.97438 * 9 6 5 11 11 H 1.08001 * 119.99964 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00060 * 180.02562 * 10 9 6 13 13 N 1.31514 * 120.00044 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00216 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47217 * 59.99896 * 14 12 10 16 16 H 1.48500 * 109.47448 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47280 * 299.99876 * 14 12 10 18 18 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 19 19 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 20 20 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 21 21 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 22 22 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 23 23 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 24 24 H 1.09003 * 109.46984 * 300.00168 * 9 6 5 25 25 H 1.08999 * 109.46938 * 60.00063 * 9 6 5 26 26 H 0.97002 * 120.00756 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 9 4.4397 -2.8273 -0.6418 8 9 5.8430 -1.0246 -0.6399 9 6 5.1667 -1.9479 1.4614 10 6 6.3554 -2.8741 1.4687 11 1 6.7856 -3.2079 0.5360 12 6 6.8939 -3.2952 2.6660 13 7 6.3703 -2.8884 3.8018 14 14 8.3669 -4.4438 2.6751 15 1 9.5059 -3.7936 1.9786 16 1 8.7508 -4.7455 4.0775 17 1 8.0148 -5.7060 1.9764 18 8 2.2923 -1.0895 0.0044 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9666 2.1203 -0.0045 23 1 4.5212 1.2433 0.0076 24 1 5.4244 -1.0212 1.9742 25 1 4.3311 -2.4258 1.9727 26 1 6.7488 -3.1849 4.6442 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258967022.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -96.971292 kcal Electronic energy + Delta-G solvation = -14411.160872 eV Core-core repulsion = 11513.140449 eV Total energy + Delta-G solvation = -2898.020424 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.070 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.12180 -46.13615 -42.31901 -33.53477 -32.98902 -32.17614 -30.00309 -26.99266 -24.13200 -21.86062 -21.29984 -19.89981 -17.68907 -16.47472 -16.26980 -15.92680 -15.26658 -14.90619 -14.21096 -13.35929 -13.23602 -13.00168 -12.92175 -12.64302 -12.45870 -12.37720 -11.88457 -11.62282 -11.52503 -11.22123 -10.73663 -10.51710 -9.79218 -9.61949 -9.43639 -8.51663 -8.14497 -6.13829 -4.18323 1.83839 2.77243 2.89627 3.32219 3.34952 3.39388 4.33008 4.43247 4.92531 5.19640 5.21043 5.25534 5.31384 5.41672 5.63477 5.67430 5.76791 5.94572 6.17493 6.22793 6.69520 7.22633 7.24660 7.40818 7.80160 8.05854 8.83702 9.45958 10.97492 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.050023 B = 0.007950 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.608041 B = 3521.347007 C = 3656.450837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.015 4.015 3 C -0.214 4.214 4 C -0.177 4.177 5 C -0.059 4.059 6 C 0.382 3.618 7 F -0.194 7.194 8 F -0.186 7.186 9 C -0.003 4.003 10 C -0.526 4.526 11 H 0.065 0.935 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.903 3.097 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.156 6.156 19 H 0.079 0.921 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.150 0.850 23 H 0.154 0.846 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 6.434 -5.971 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 C -0.233 4.233 4 C -0.196 4.196 5 C -0.111 4.111 6 C 0.345 3.655 7 F -0.175 7.175 8 F -0.167 7.167 9 C -0.040 4.040 10 C -0.564 4.564 11 H 0.083 0.917 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.730 3.270 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.199 1.199 18 O -0.052 6.052 19 H 0.098 0.902 20 H 0.096 0.904 21 H 0.106 0.894 22 H 0.167 0.833 23 H 0.172 0.828 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.951 6.100 -5.806 12.290 hybrid contribution 0.906 -0.350 -0.024 0.971 sum -8.045 5.751 -5.830 11.479 Atomic orbital electron populations 1.20284 0.85034 1.04062 1.03337 1.22552 0.94116 0.84366 1.05487 1.21525 0.92357 0.99323 1.10061 1.21553 0.98609 0.93260 1.06204 1.23192 0.83687 0.95363 1.08809 1.19416 0.77881 0.74986 0.93178 1.92967 1.92633 1.48528 1.83393 1.92972 1.56649 1.83455 1.83639 1.20166 0.99374 0.99990 0.84480 1.20917 1.13344 1.28756 0.93403 0.91668 1.24944 0.97460 0.96310 0.95190 1.69945 1.41176 1.44488 0.97456 0.86463 0.82398 0.81079 0.77028 1.19912 1.21114 1.19920 1.83987 1.15462 1.34724 1.71051 0.90194 0.90411 0.89411 0.83255 0.82817 0.93116 0.93198 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.00 0.38 -0.34 15 2 C -0.01 -0.22 7.32 -35.63 -0.26 -0.49 15 3 C -0.21 -3.22 10.81 -39.71 -0.43 -3.65 15 4 C -0.18 -3.18 10.46 -39.70 -0.42 -3.59 15 5 C -0.06 -1.23 6.19 -35.62 -0.22 -1.45 15 6 C 0.38 8.96 1.98 -27.88 -0.06 8.90 15 7 F -0.19 -4.71 16.74 2.25 0.04 -4.67 15 8 F -0.19 -4.31 16.46 2.25 0.04 -4.28 15 9 C 0.00 -0.07 4.55 -27.88 -0.13 -0.20 15 10 C -0.53 -15.09 8.58 -34.44 -0.30 -15.39 15 11 H 0.07 1.86 7.74 -52.49 -0.41 1.45 15 12 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 13 N -0.89 -26.34 13.29 55.43 0.74 -25.61 15 14 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15 15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 18 O -0.16 -3.06 10.64 5.72 0.06 -3.00 15 19 H 0.08 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.09 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.15 1.73 8.06 -52.49 -0.42 1.30 15 23 H 0.15 2.52 8.06 -52.48 -0.42 2.09 15 24 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.05 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 246.63 15.07 3.72 3.72 Total: -1.00 -31.04 246.63 -4.46 -35.50 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -2.50 Total: -3.87 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.53 Total: -14.49 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: 0.06 Total: -3.00 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.04 -4.46 -35.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258967022.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.468 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds