Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.46957 * 209.99952 * 6 5 4 8 8 F 1.39902 * 109.47187 * 329.99887 * 6 5 4 9 9 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 10 10 C 1.50698 * 109.47011 * 179.97438 * 9 6 5 11 11 H 1.08001 * 119.99964 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00060 * 180.02562 * 10 9 6 13 13 N 1.31514 * 120.00044 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00216 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47217 * 59.99896 * 14 12 10 16 16 H 1.48500 * 109.47448 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47280 * 299.99876 * 14 12 10 18 18 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 19 19 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 20 20 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 21 21 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 22 22 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 23 23 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 24 24 H 1.09003 * 109.46984 * 300.00168 * 9 6 5 25 25 H 1.08999 * 109.46938 * 60.00063 * 9 6 5 26 26 H 0.97002 * 120.00756 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 9 4.4397 -2.8273 -0.6418 8 9 5.8430 -1.0246 -0.6399 9 6 5.1667 -1.9479 1.4614 10 6 6.3554 -2.8741 1.4687 11 1 6.7856 -3.2079 0.5360 12 6 6.8939 -3.2952 2.6660 13 7 6.3703 -2.8884 3.8018 14 14 8.3669 -4.4438 2.6751 15 1 9.5059 -3.7936 1.9786 16 1 8.7508 -4.7455 4.0775 17 1 8.0148 -5.7060 1.9764 18 8 2.2923 -1.0895 0.0044 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9666 2.1203 -0.0045 23 1 4.5212 1.2433 0.0076 24 1 5.4244 -1.0212 1.9742 25 1 4.3311 -2.4258 1.9727 26 1 6.7488 -3.1849 4.6442 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258967022.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -115.456395 kcal Electronic energy + Delta-G solvation = -14411.962446 eV Core-core repulsion = 11513.140449 eV Total energy + Delta-G solvation = -2898.821998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.070 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.99618 -48.01918 -43.67334 -35.63223 -34.28387 -33.66726 -31.72765 -28.56474 -25.89438 -23.57352 -22.77910 -21.33069 -19.46056 -18.35815 -18.14096 -17.67990 -16.99051 -16.29916 -16.15988 -15.00537 -14.70844 -14.42006 -14.40328 -14.03994 -13.88463 -13.78643 -13.66043 -13.55092 -13.25751 -12.78182 -12.66610 -12.36907 -11.76890 -11.53831 -10.98735 -10.70518 -9.48607 -8.32406 -6.46349 0.46253 1.39165 1.43197 1.48079 1.50097 1.54103 2.36240 2.85426 3.01129 3.39256 3.67786 3.81960 3.94947 3.99792 4.54455 4.63019 4.72409 4.73170 4.92136 5.04233 5.11582 5.16825 5.53521 5.57327 5.87836 6.01873 6.61120 7.22796 8.79340 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.050023 B = 0.007950 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.608041 B = 3521.347007 C = 3656.450837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.008 4.008 3 C -0.216 4.216 4 C -0.165 4.165 5 C -0.109 4.109 6 C 0.386 3.614 7 F -0.204 7.204 8 F -0.188 7.188 9 C 0.004 3.996 10 C -0.553 4.553 11 H 0.060 0.940 12 C 0.014 3.986 13 N -0.923 5.923 14 Si 0.973 3.027 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.268 1.268 18 O -0.182 6.182 19 H 0.103 0.897 20 H 0.079 0.921 21 H 0.119 0.881 22 H 0.191 0.809 23 H 0.164 0.836 24 H 0.037 0.963 25 H 0.027 0.973 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 7.261 -6.299 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C -0.235 4.235 4 C -0.185 4.185 5 C -0.159 4.159 6 C 0.349 3.651 7 F -0.185 7.185 8 F -0.169 7.169 9 C -0.034 4.034 10 C -0.591 4.591 11 H 0.078 0.922 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.796 3.204 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.193 1.193 18 O -0.079 6.079 19 H 0.121 0.879 20 H 0.098 0.902 21 H 0.137 0.863 22 H 0.208 0.792 23 H 0.182 0.818 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.689 6.937 -6.143 13.407 hybrid contribution 1.024 -0.541 0.080 1.161 sum -8.665 6.396 -6.063 12.359 Atomic orbital electron populations 1.20607 0.81062 1.05726 1.05296 1.23730 0.96190 0.83391 1.02511 1.21971 0.90574 1.01253 1.09689 1.21927 1.00663 0.92268 1.03617 1.22621 0.83636 0.95576 1.14061 1.19028 0.79375 0.75484 0.91171 1.92930 1.92750 1.49448 1.83358 1.92949 1.57138 1.83368 1.83417 1.19938 0.98001 0.98730 0.86688 1.21224 1.14434 1.29794 0.93623 0.92168 1.25879 1.00415 0.97736 0.94587 1.70047 1.42582 1.45438 0.98129 0.85386 0.78578 0.78829 0.77640 1.18962 1.19925 1.19250 1.83952 1.15292 1.36849 1.71839 0.87901 0.90195 0.86250 0.79164 0.81820 0.94470 0.95466 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.42 71.23 0.74 -0.43 15 2 C -0.01 -0.23 7.32 24.83 0.18 -0.05 15 3 C -0.22 -5.93 10.81 22.19 0.24 -5.69 15 4 C -0.17 -5.80 10.46 22.19 0.23 -5.56 15 5 C -0.11 -4.58 6.19 24.84 0.15 -4.42 15 6 C 0.39 18.71 1.98 29.85 0.06 18.77 15 7 F -0.20 -10.23 16.74 44.97 0.75 -9.48 15 8 F -0.19 -8.91 16.46 44.97 0.74 -8.17 15 9 C 0.00 0.22 4.55 29.85 0.14 0.35 15 10 C -0.55 -32.53 8.58 25.60 0.22 -32.31 15 11 H 0.06 3.51 7.74 -2.91 -0.02 3.49 15 12 C 0.01 0.78 5.46 84.65 0.46 1.24 15 13 N -0.92 -55.26 13.29 21.44 0.28 -54.98 15 14 Si 0.97 44.51 29.54 68.60 2.03 46.53 15 15 H -0.26 -11.69 7.11 99.48 0.71 -10.98 15 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 18 O -0.18 -7.12 10.64 -2.45 -0.03 -7.15 15 19 H 0.10 1.30 8.14 -2.38 -0.02 1.28 15 20 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.19 3.52 8.06 -2.91 -0.02 3.49 15 23 H 0.16 5.22 8.06 -2.91 -0.02 5.20 15 24 H 0.04 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.03 1.59 8.14 -2.39 -0.02 1.57 15 26 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 Total: -1.00 -68.23 246.63 7.39 -60.84 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 1.18 Total: 0.51 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 2.43 Total: -28.10 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.28 Total: -54.98 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.03 Total: -7.15 kcal Atomic # 9 Polarization: -19.15 SS G_CDS: 1.49 Total: -17.66 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.23 7.39 -60.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258967022.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.612 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds