Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.57199 * 300.00186 * 4 3 2 6 6 S 1.81751 * 109.57549 * 60.25384 * 4 3 2 7 7 C 1.81748 * 102.21987 * 66.54485 * 6 4 3 8 8 C 1.53101 * 108.84058 * 53.26348 * 7 6 4 9 9 C 1.52581 * 109.95763 * 296.97630 * 8 7 6 10 10 C 1.52839 * 110.80196 * 70.68566 * 9 8 7 11 11 H 1.09000 * 109.34336 * 49.44984 * 10 9 8 12 12 C 1.50697 * 109.57492 * 169.24168 * 10 9 8 13 13 H 1.07996 * 120.00614 * 120.43717 * 12 10 9 14 14 C 1.37884 * 119.99769 * 300.43787 * 12 10 9 15 15 N 1.31517 * 119.99746 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99892 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46781 * 90.00044 * 16 14 12 18 18 H 1.48502 * 109.46958 * 210.00005 * 16 14 12 19 19 H 1.48498 * 109.47393 * 330.00373 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 25 25 H 1.09001 * 109.58011 * 173.07056 * 7 6 4 26 26 H 1.09003 * 109.57638 * 293.45819 * 7 6 4 27 27 H 1.09000 * 109.38796 * 57.12152 * 8 7 6 28 28 H 1.08997 * 109.38920 * 176.92417 * 8 7 6 29 29 H 1.08993 * 109.22610 * 190.99880 * 9 8 7 30 30 H 1.08998 * 109.22586 * 310.39700 * 9 8 7 31 31 H 0.97000 * 119.99231 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8358 0.9770 0.8886 6 16 4.1044 0.6615 -1.4878 7 6 3.4800 1.7332 -2.8163 8 6 3.8719 3.1810 -2.5089 9 6 3.2049 3.6376 -1.2148 10 6 3.8283 2.9387 -0.0070 11 1 4.9137 3.0213 -0.0625 12 6 3.3428 3.5927 1.2609 13 1 2.8054 3.0125 1.9964 14 6 3.5848 4.9320 1.4821 15 7 4.2388 5.6387 0.5862 16 14 2.9824 5.7429 3.0534 17 1 4.0312 5.6355 4.0992 18 1 2.6900 7.1749 2.7907 19 1 1.7473 5.0628 3.5194 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.9188 1.4301 -3.7669 26 1 2.3943 1.6525 -2.8707 27 1 4.9545 3.2477 -2.4012 28 1 3.5493 3.8247 -3.3273 29 1 3.3285 4.7152 -1.1082 30 1 2.1418 3.4007 -1.2560 31 1 4.4092 6.5808 0.7420 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259388715.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = -61.559761 kcal Electronic energy + Delta-G solvation = -13383.408885 eV Core-core repulsion = 11176.597501 eV Total energy + Delta-G solvation = -2206.811383 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.78059 -35.32607 -32.54089 -31.14243 -29.31139 -25.59966 -24.84320 -22.35182 -21.41435 -19.43680 -17.15918 -15.91655 -15.65146 -14.96120 -14.87721 -14.00620 -13.51254 -13.09250 -12.67564 -12.48865 -12.26983 -11.90671 -11.45643 -11.18854 -10.89847 -10.86922 -10.71080 -10.43060 -10.31329 -9.94815 -9.71569 -9.12503 -8.87274 -8.51680 -8.32122 -7.21246 -6.00642 -4.07946 2.44076 3.09957 3.30385 3.37171 3.42121 4.31637 4.43511 5.27552 5.43625 5.53442 5.58328 5.62760 5.79338 5.88462 5.97882 6.00475 6.20137 6.27631 6.33502 6.42620 6.49682 6.78337 7.13441 7.28579 7.61155 7.78776 7.92181 8.04680 8.36589 8.92980 9.55474 11.03366 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.029064 B = 0.011961 C = 0.009486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.162984 B = 2340.339550 C = 2951.025261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.349 6.349 4 C 0.160 3.840 5 H 0.084 0.916 6 S -0.355 6.355 7 C -0.056 4.056 8 C -0.120 4.120 9 C -0.121 4.121 10 C 0.061 3.939 11 H 0.050 0.950 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.043 0.957 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -7.292 -3.825 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 O -0.268 6.268 4 C -0.006 4.006 5 H 0.101 0.899 6 S -0.130 6.130 7 C -0.205 4.205 8 C -0.158 4.158 9 C -0.159 4.159 10 C 0.042 3.958 11 H 0.068 0.932 12 C -0.541 4.541 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.944 -7.890 -3.950 9.302 hybrid contribution -0.855 1.185 0.880 1.706 sum -3.799 -6.705 -3.070 8.296 Atomic orbital electron populations 1.21677 0.94436 1.01282 1.02836 1.22571 0.94893 0.85679 1.00490 1.88128 1.20360 1.24781 1.93530 1.24771 0.82175 1.02505 0.91187 0.89884 1.86555 1.73256 1.44594 1.08605 1.23258 1.02691 0.97813 0.96688 1.21798 1.01655 0.92520 0.99860 1.21588 0.97844 1.05080 0.91358 1.18972 0.96990 0.84448 0.95420 0.93195 1.21050 1.35838 0.94595 1.02628 0.92251 1.24932 0.95103 0.97230 0.96722 1.69862 1.40855 1.08051 1.34157 0.86552 0.79200 0.78534 0.83495 1.20715 1.21249 1.19875 0.92106 0.91857 0.92243 0.94275 0.92159 0.89615 0.90578 0.91585 0.92686 0.87900 0.93809 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 37.16 0.38 -1.66 16 2 C 0.04 0.70 6.37 37.16 0.24 0.93 16 3 O -0.35 -7.40 8.96 -35.23 -0.32 -7.71 16 4 C 0.16 3.48 2.68 37.21 0.10 3.58 16 5 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 6 S -0.36 -6.88 20.42 -107.50 -2.20 -9.08 16 7 C -0.06 -1.00 6.45 37.21 0.24 -0.76 16 8 C -0.12 -2.35 5.75 -26.89 -0.15 -2.50 16 9 C -0.12 -2.84 4.77 -27.03 -0.13 -2.97 16 10 C 0.06 1.52 1.80 -91.81 -0.17 1.36 16 11 H 0.05 1.34 8.06 -51.93 -0.42 0.93 16 12 C -0.50 -13.62 8.30 -34.44 -0.29 -13.91 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.67 5.26 -17.82 -0.09 1.57 16 15 N -0.89 -24.88 11.27 55.43 0.62 -24.25 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.99 6.87 -51.93 -0.36 0.63 16 25 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.71 5.79 -51.93 -0.30 2.41 16 30 H 0.04 1.05 7.28 -51.93 -0.38 0.67 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 260.42 15.07 3.92 3.92 Total: -1.00 -27.73 260.42 -7.65 -35.38 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.80 Total: -0.09 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 0.13 Total: -14.35 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.62 Total: -24.25 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.32 Total: -7.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -2.20 Total: -9.08 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.73 -7.65 -35.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388715.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.179 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds