Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48499 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46954 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47075 * 60.00113 * 3 2 1 7 7 C 1.40080 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99858 * 163.39246 * 7 2 1 9 9 C 1.41074 * 119.99977 * 343.38774 * 7 2 1 10 10 C 1.41256 * 120.56230 * 335.68568 * 9 7 2 11 11 C 1.36692 * 118.39812 * 179.97438 * 10 9 7 12 12 C 1.39782 * 119.47375 * 0.02562 * 11 10 9 13 13 C 1.48155 * 119.44427 * 179.97438 * 12 11 10 14 14 C 1.42385 * 126.95353 * 180.02562 * 13 12 11 15 15 C 1.35197 * 103.92835 * 179.97438 * 14 13 12 16 16 O 1.34073 * 106.72544 * 359.97438 * 15 14 13 17 17 N 1.20908 * 111.86564 * 0.02562 * 16 15 14 18 18 N 1.32964 * 121.11205 * 0.25768 * 12 11 10 19 19 C 1.31255 * 121.74459 * 359.46876 * 18 12 11 20 20 H 0.96998 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.80233 * 359.96145 * 10 9 7 22 22 H 1.08006 * 120.26059 * 179.97438 * 11 10 9 23 23 H 1.07992 * 128.03199 * 359.70801 * 14 13 12 24 24 H 1.08010 * 126.63597 * 179.97438 * 15 14 13 25 25 H 1.07994 * 119.80789 * 180.24921 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8828 2.3965 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0079 -1.2132 -0.0005 8 1 3.0541 -1.2326 -0.2679 9 6 1.3466 -2.4095 0.3482 10 6 0.1941 -2.3815 1.1644 11 6 -0.4119 -3.5669 1.4745 12 6 0.1206 -4.7613 0.9810 13 6 -0.5363 -6.0458 1.3180 14 6 -0.1330 -7.3476 0.9056 15 6 -1.0482 -8.1662 1.4713 16 8 -1.8994 -7.3832 2.1495 17 7 -1.6064 -6.2138 2.0573 18 7 1.2101 -4.7647 0.2187 19 6 1.8252 -3.6532 -0.1115 20 1 -0.4850 0.8401 0.0004 21 1 -0.1988 -1.4461 1.5347 22 1 -1.2946 -3.5805 2.0967 23 1 0.7062 -7.6178 0.2820 24 1 -1.0863 -9.2428 1.3921 25 1 2.7056 -3.6920 -0.7358 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259391801.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = 79.301144 kcal Electronic energy + Delta-G solvation = -13226.391790 eV Core-core repulsion = 10786.704299 eV Total energy + Delta-G solvation = -2439.687491 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.18930 -38.39471 -34.54806 -33.25861 -31.28057 -30.68376 -29.80482 -26.06231 -23.13937 -22.33869 -21.30468 -20.24286 -17.60181 -17.45802 -16.91179 -15.58498 -15.33181 -14.41633 -13.98596 -13.58281 -12.76443 -12.69494 -12.54746 -11.83938 -11.70146 -11.47615 -11.20110 -10.79096 -10.73079 -10.00537 -9.95621 -9.44404 -9.15766 -8.41838 -8.19467 -7.58352 -7.05995 -4.65660 1.87235 2.24440 2.83318 2.90138 2.92709 2.97733 3.44488 3.69826 3.81180 4.47781 4.76442 5.19785 5.54980 5.74297 5.84767 6.11092 6.17946 6.54326 6.61686 6.67241 6.80207 6.87912 7.13137 7.57197 7.68728 7.79717 8.25393 8.44305 8.53085 8.93451 9.44541 9.82210 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.081357 B = 0.006560 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.078380 B = 4267.065850 C = 4545.075355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.072 3.928 10 C -0.148 4.148 11 C -0.104 4.104 12 C 0.012 3.988 13 C 0.115 3.885 14 C -0.214 4.214 15 C -0.085 4.085 16 O 0.082 5.918 17 N -0.386 5.386 18 N -0.441 5.441 19 C -0.014 4.014 20 H 0.288 0.712 21 H 0.129 0.871 22 H 0.104 0.896 23 H 0.168 0.832 24 H 0.208 0.792 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -5.217 1.019 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.108 0.892 9 C 0.067 3.933 10 C -0.173 4.173 11 C -0.126 4.126 12 C -0.122 4.122 13 C -0.041 4.041 14 C -0.236 4.236 15 C -0.167 4.167 16 O 0.020 5.980 17 N -0.095 5.095 18 N -0.150 5.150 19 C -0.181 4.181 20 H 0.099 0.901 21 H 0.147 0.853 22 H 0.122 0.878 23 H 0.185 0.815 24 H 0.225 0.775 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.516 -5.098 1.410 5.315 hybrid contribution 0.612 1.165 -0.308 1.351 sum 0.096 -3.934 1.102 4.086 Atomic orbital electron populations 1.69771 1.07967 1.30199 1.31612 1.26139 0.94874 1.02117 0.91917 0.86096 0.81001 0.79907 0.78926 1.17948 1.19580 1.19352 1.19761 0.98047 0.90741 1.37353 0.89250 1.18648 0.91952 0.93758 0.88969 1.21342 0.98774 0.96901 1.00260 1.21251 0.99022 0.93005 0.99278 1.17448 0.98026 0.87912 1.08864 1.21840 0.92143 0.94649 0.95489 1.22780 1.03270 0.91618 1.05892 1.25751 0.92992 0.99107 0.98806 1.84756 1.45188 1.12108 1.55945 1.74099 1.17494 0.96080 1.21872 1.66709 1.06206 1.32320 1.09727 1.22440 1.02701 0.87532 1.05406 0.90086 0.85315 0.87821 0.81453 0.77519 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.68 10.90 55.55 0.61 -18.07 15 2 C 0.07 1.64 5.19 -17.32 -0.09 1.55 15 3 Si 0.92 17.11 29.59 -169.99 -5.03 12.08 15 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 6 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 7 C -0.43 -10.55 9.07 -37.82 -0.34 -10.89 15 8 H 0.09 2.05 7.90 -52.49 -0.41 1.63 15 9 C 0.07 1.85 5.59 -106.64 -0.60 1.26 15 10 C -0.15 -3.81 8.74 -38.99 -0.34 -4.15 15 11 C -0.10 -2.60 9.66 -39.56 -0.38 -2.99 15 12 C 0.01 0.31 6.76 -82.73 -0.56 -0.25 15 13 C 0.11 2.52 7.08 -82.49 -0.58 1.94 15 14 C -0.21 -3.80 10.94 -39.07 -0.43 -4.22 15 15 C -0.09 -1.22 12.27 29.65 0.36 -0.85 15 16 O 0.08 1.44 11.18 17.09 0.19 1.63 15 17 N -0.39 -8.13 11.77 33.32 0.39 -7.74 15 18 N -0.44 -10.92 10.09 -9.08 -0.09 -11.01 15 19 C -0.01 -0.35 10.97 -16.76 -0.18 -0.53 15 20 H 0.29 6.24 8.29 -40.82 -0.34 5.90 15 21 H 0.13 3.34 6.20 -52.49 -0.33 3.01 15 22 H 0.10 2.46 7.86 -52.48 -0.41 2.05 15 23 H 0.17 2.71 8.06 -52.49 -0.42 2.29 15 24 H 0.21 1.77 8.06 -52.48 -0.42 1.35 15 25 H 0.13 2.93 8.06 -52.49 -0.42 2.51 15 LS Contribution 235.56 15.07 3.55 3.55 Total: -1.00 -28.33 235.56 -5.08 -33.41 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -1.55 Total: 5.30 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -3.14 Total: -19.14 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.91 Total: -36.82 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.33 -5.08 -33.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391801.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.711 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds