Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48499 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46954 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47075 * 60.00113 * 3 2 1 7 7 C 1.40080 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99858 * 163.39246 * 7 2 1 9 9 C 1.41074 * 119.99977 * 343.38774 * 7 2 1 10 10 C 1.41256 * 120.56230 * 335.68568 * 9 7 2 11 11 C 1.36692 * 118.39812 * 179.97438 * 10 9 7 12 12 C 1.39782 * 119.47375 * 0.02562 * 11 10 9 13 13 C 1.48155 * 119.44427 * 179.97438 * 12 11 10 14 14 C 1.42385 * 126.95353 * 180.02562 * 13 12 11 15 15 C 1.35197 * 103.92835 * 179.97438 * 14 13 12 16 16 O 1.34073 * 106.72544 * 359.97438 * 15 14 13 17 17 N 1.20908 * 111.86564 * 0.02562 * 16 15 14 18 18 N 1.32964 * 121.11205 * 0.25768 * 12 11 10 19 19 C 1.31255 * 121.74459 * 359.46876 * 18 12 11 20 20 H 0.96998 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.80233 * 359.96145 * 10 9 7 22 22 H 1.08006 * 120.26059 * 179.97438 * 11 10 9 23 23 H 1.07992 * 128.03199 * 359.70801 * 14 13 12 24 24 H 1.08010 * 126.63597 * 179.97438 * 15 14 13 25 25 H 1.07994 * 119.80789 * 180.24921 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8828 2.3965 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0079 -1.2132 -0.0005 8 1 3.0541 -1.2326 -0.2679 9 6 1.3466 -2.4095 0.3482 10 6 0.1941 -2.3815 1.1644 11 6 -0.4119 -3.5669 1.4745 12 6 0.1206 -4.7613 0.9810 13 6 -0.5363 -6.0458 1.3180 14 6 -0.1330 -7.3476 0.9056 15 6 -1.0482 -8.1662 1.4713 16 8 -1.8994 -7.3832 2.1495 17 7 -1.6064 -6.2138 2.0573 18 7 1.2101 -4.7647 0.2187 19 6 1.8252 -3.6532 -0.1115 20 1 -0.4850 0.8401 0.0004 21 1 -0.1988 -1.4461 1.5347 22 1 -1.2946 -3.5805 2.0967 23 1 0.7062 -7.6178 0.2820 24 1 -1.0863 -9.2428 1.3921 25 1 2.7056 -3.6920 -0.7358 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259391801.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = 61.865899 kcal Electronic energy + Delta-G solvation = -13227.147839 eV Core-core repulsion = 10786.704299 eV Total energy + Delta-G solvation = -2440.443540 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.68673 -40.27744 -36.32585 -34.83520 -32.86776 -32.46769 -31.60972 -27.88195 -24.83235 -24.01951 -23.05220 -21.83287 -19.41998 -18.96734 -18.41079 -17.32810 -17.01673 -16.25650 -15.66077 -15.12655 -14.52371 -14.35248 -14.04910 -13.66398 -13.39467 -13.28058 -12.80912 -12.29960 -12.28891 -11.77789 -11.60059 -11.12360 -10.50386 -10.36742 -10.12122 -9.43963 -8.83441 -6.54072 0.20250 0.85963 0.97438 1.35091 1.39701 1.56008 1.77430 2.13528 2.62304 2.68048 3.15934 3.62697 3.85984 4.15443 4.41368 4.51515 4.67521 4.71627 4.87190 4.98232 5.05666 5.23074 5.24179 5.67258 5.80037 5.86446 6.36057 6.58533 6.63231 7.47824 7.57981 8.09079 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.081357 B = 0.006560 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.078380 B = 4267.065850 C = 4545.075355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.249 1.249 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.452 4.452 8 H 0.101 0.899 9 C 0.046 3.954 10 C -0.166 4.166 11 C -0.117 4.117 12 C 0.000 4.000 13 C 0.072 3.928 14 C -0.235 4.235 15 C -0.040 4.040 16 O 0.095 5.905 17 N -0.410 5.410 18 N -0.444 5.444 19 C -0.027 4.027 20 H 0.298 0.702 21 H 0.120 0.880 22 H 0.106 0.894 23 H 0.179 0.821 24 H 0.274 0.726 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -6.166 0.879 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.172 1.172 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.119 0.881 9 C 0.041 3.959 10 C -0.191 4.191 11 C -0.138 4.138 12 C -0.135 4.135 13 C -0.083 4.083 14 C -0.257 4.257 15 C -0.121 4.121 16 O 0.029 5.971 17 N -0.117 5.117 18 N -0.153 5.153 19 C -0.193 4.193 20 H 0.109 0.891 21 H 0.137 0.863 22 H 0.124 0.876 23 H 0.196 0.804 24 H 0.290 0.710 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.126 -6.035 1.265 6.167 hybrid contribution 0.391 1.295 -0.244 1.374 sum 0.266 -4.740 1.021 4.856 Atomic orbital electron populations 1.69813 1.09630 1.31832 1.31513 1.27099 0.95542 1.05438 0.90646 0.84937 0.79634 0.74814 0.79113 1.17205 1.18744 1.18883 1.20107 0.98711 0.91269 1.37947 0.88113 1.18957 0.92371 0.94916 0.89647 1.21346 0.99679 0.96801 1.01245 1.21375 0.99314 0.93363 0.99743 1.17872 0.98015 0.89258 1.08367 1.21900 0.93459 0.95248 0.97672 1.22987 1.05025 0.90285 1.07419 1.26779 0.89681 1.00914 0.94745 1.84708 1.45363 1.11395 1.55606 1.74106 1.17522 0.97959 1.22110 1.66776 1.06371 1.32235 1.09934 1.22806 1.03429 0.87375 1.05714 0.89088 0.86267 0.87578 0.80360 0.71032 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.49 10.90 21.85 0.24 -39.25 15 2 C 0.03 1.45 5.19 85.30 0.44 1.90 15 3 Si 1.00 34.41 29.59 68.60 2.03 36.44 15 4 H -0.25 -8.26 7.11 99.48 0.71 -7.55 15 5 H -0.26 -8.71 7.11 99.48 0.71 -8.01 15 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 15 7 C -0.45 -22.44 9.07 23.41 0.21 -22.23 15 8 H 0.10 4.60 7.90 -2.91 -0.02 4.58 15 9 C 0.05 2.46 5.59 -21.17 -0.12 2.34 15 10 C -0.17 -8.92 8.74 22.65 0.20 -8.72 15 11 C -0.12 -6.08 9.66 22.28 0.22 -5.87 15 12 C 0.00 -0.01 6.76 41.98 0.28 0.27 15 13 C 0.07 3.16 7.08 42.91 0.30 3.47 15 14 C -0.24 -7.85 10.94 22.60 0.25 -7.60 15 15 C -0.04 -0.98 12.27 67.12 0.82 -0.16 15 16 O 0.09 3.05 11.18 71.34 0.80 3.85 15 17 N -0.41 -16.99 11.77 -49.37 -0.58 -17.57 15 18 N -0.44 -22.38 10.09 -182.65 -1.84 -24.23 15 19 C -0.03 -1.36 10.97 85.45 0.94 -0.43 15 20 H 0.30 12.99 8.29 -92.71 -0.77 12.23 15 21 H 0.12 6.49 6.20 -2.91 -0.02 6.48 15 22 H 0.11 5.29 7.86 -2.91 -0.02 5.27 15 23 H 0.18 5.43 8.06 -2.91 -0.02 5.41 15 24 H 0.27 2.72 8.06 -2.91 -0.02 2.70 15 25 H 0.15 6.80 8.06 -2.91 -0.02 6.78 15 Total: -1.00 -63.52 235.56 5.40 -58.11 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.22 Total: 19.69 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 3.55 Total: -37.03 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.19 Total: -81.05 kcal Atomic # 8 Polarization: 3.05 SS G_CDS: 0.80 Total: 3.85 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -63.52 5.40 -58.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391801.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.977 kcal (2) G-P(sol) polarization free energy of solvation -63.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds