Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38739 * 119.79007 * 2 1 4 4 C 1.37857 * 120.68474 * 179.97438 * 3 2 1 5 5 C 1.38938 * 119.81596 * 0.02562 * 4 3 2 6 6 O 1.34807 * 133.49867 * 180.02562 * 5 4 3 7 7 C 1.34445 * 110.89172 * 179.97438 * 6 5 4 8 8 C 1.33991 * 110.15664 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.90929 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46860 * 265.02026 * 9 8 7 11 11 H 1.07995 * 120.00535 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99481 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99734 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00372 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47273 * 90.00081 * 14 12 10 16 16 H 1.48500 * 109.47057 * 210.00169 * 14 12 10 17 17 H 1.48506 * 109.47076 * 329.99676 * 14 12 10 18 18 C 1.40491 * 119.22346 * 359.97438 * 5 4 3 19 19 C 1.36740 * 119.78957 * 179.75911 * 2 1 3 20 20 H 1.08999 * 109.47249 * 89.99599 * 1 2 3 21 21 H 1.08993 * 109.47134 * 210.00259 * 1 2 3 22 22 H 1.08998 * 109.46853 * 329.99668 * 1 2 3 23 23 H 1.07998 * 119.66100 * 359.96103 * 3 2 1 24 24 H 1.08000 * 120.08939 * 180.02562 * 4 3 2 25 25 H 1.08008 * 124.92129 * 180.02562 * 7 6 5 26 26 H 1.09002 * 109.47049 * 25.02568 * 9 8 7 27 27 H 1.09003 * 109.47015 * 145.02150 * 9 8 7 28 28 H 0.97001 * 119.99934 * 180.02562 * 13 12 10 29 29 H 1.08001 * 120.13915 * 359.95252 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.2040 0.0000 4 6 3.5748 1.2256 0.0005 5 6 4.2843 0.0310 0.0005 6 8 5.5989 -0.2673 0.0014 7 6 5.7885 -1.5984 0.0015 8 6 4.6083 -2.2328 0.0001 9 6 4.3816 -3.7227 -0.0008 10 6 4.1855 -4.2000 -1.4166 11 1 4.2217 -3.4952 -2.2341 12 6 3.9607 -5.5369 -1.6684 13 7 3.7900 -5.9536 -2.9041 14 14 3.8988 -6.7561 -0.2547 15 1 2.5033 -6.8701 0.2400 16 1 4.3670 -8.0844 -0.7256 17 1 4.7770 -6.2834 0.8456 18 6 3.5805 -1.1848 0.0005 19 6 2.1864 -1.1867 0.0050 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6474 2.1341 -0.0006 24 1 4.1016 2.1684 0.0009 25 1 6.7524 -2.0857 0.0025 26 1 5.2472 -4.2221 0.4345 27 1 3.4940 -3.9555 0.5875 28 1 3.6315 -6.8940 -3.0813 29 1 1.6452 -2.1213 0.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259557524.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = -5.250685 kcal Electronic energy + Delta-G solvation = -13647.815239 eV Core-core repulsion = 11308.001649 eV Total energy + Delta-G solvation = -2339.813590 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.26793 -39.09390 -35.91751 -34.06842 -33.00388 -31.26465 -29.40080 -27.63086 -24.80557 -23.90215 -22.36667 -20.81180 -19.01209 -17.97160 -17.81018 -16.95458 -16.31247 -16.06364 -15.08543 -14.86926 -14.75674 -14.43110 -14.26991 -13.91959 -13.31025 -12.95398 -12.69047 -12.56995 -12.44837 -12.31489 -12.03592 -11.71041 -11.60050 -10.81770 -10.66263 -9.32555 -8.94959 -8.32226 -6.38170 0.05603 0.42509 1.35548 1.36986 1.49269 1.55076 1.97698 2.33391 2.77736 3.01388 3.64094 3.80484 4.00277 4.15832 4.36734 4.43609 4.60221 4.67601 4.77766 4.88205 4.94125 5.01131 5.14472 5.27129 5.38927 5.42448 5.48456 5.63548 5.67923 5.84654 6.23848 6.31298 6.67012 7.25244 8.84749 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.008910 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.328906 B = 3141.923396 C = 3678.070939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C -0.091 4.091 4 C -0.108 4.108 5 C 0.016 3.984 6 O -0.203 6.203 7 C -0.017 4.017 8 C -0.166 4.166 9 C 0.056 3.944 10 C -0.522 4.522 11 H 0.020 0.980 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.953 3.047 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.242 1.242 18 C -0.148 4.148 19 C -0.094 4.094 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.094 0.906 23 H 0.175 0.825 24 H 0.160 0.840 25 H 0.233 0.767 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.269 0.731 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 12.820 9.257 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.126 4.126 5 C -0.030 4.030 6 O -0.106 6.106 7 C -0.080 4.080 8 C -0.168 4.168 9 C 0.018 3.982 10 C -0.560 4.560 11 H 0.039 0.961 12 C -0.188 4.188 13 N -0.590 5.590 14 Si 0.775 3.225 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.166 1.166 18 C -0.149 4.149 19 C -0.112 4.112 20 H 0.093 0.907 21 H 0.082 0.918 22 H 0.113 0.887 23 H 0.193 0.807 24 H 0.177 0.823 25 H 0.249 0.751 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.048 12.873 9.152 16.086 hybrid contribution 0.090 -1.302 -0.186 1.318 sum -2.957 11.571 8.967 14.934 Atomic orbital electron populations 1.20796 0.88463 1.03924 1.03057 1.19916 0.98066 0.92054 1.00808 1.21236 0.92137 0.98760 0.98747 1.20322 0.93739 0.94324 1.04202 1.20161 0.81651 0.96253 1.04985 1.83908 1.24351 1.25063 1.77236 1.24111 1.00509 0.78965 1.04442 1.21581 0.92497 0.96755 1.05927 1.17974 0.97412 0.87303 0.95465 1.21134 1.49439 0.93330 0.92078 0.96108 1.25991 0.93808 1.00356 0.98615 1.70066 1.50556 1.16634 1.21700 0.85623 0.79750 0.77584 0.79522 1.19158 1.20562 1.16560 1.20236 0.95405 0.93205 1.06006 1.20381 0.91564 0.99083 1.00152 0.90715 0.91771 0.88719 0.80725 0.82273 0.75111 0.93965 0.95696 0.92257 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 10.00 71.24 0.71 -1.51 15 2 C -0.11 -3.14 5.85 -20.09 -0.12 -3.26 15 3 C -0.09 -2.23 9.66 22.30 0.22 -2.02 15 4 C -0.11 -3.04 10.07 22.35 0.23 -2.81 15 5 C 0.02 0.62 7.42 22.99 0.17 0.79 15 6 O -0.20 -7.69 10.58 -8.88 -0.09 -7.79 15 7 C -0.02 -0.65 11.89 66.85 0.79 0.14 15 8 C -0.17 -7.54 5.54 -18.59 -0.10 -7.64 15 9 C 0.06 2.75 4.59 29.10 0.13 2.89 15 10 C -0.52 -31.17 9.65 25.60 0.25 -30.92 15 11 H 0.02 1.40 7.98 -2.91 -0.02 1.38 15 12 C 0.01 0.55 5.47 84.65 0.46 1.02 15 13 N -0.95 -60.22 13.96 21.45 0.30 -59.93 15 14 Si 0.95 44.03 27.47 68.60 1.88 45.91 15 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 17 H -0.24 -10.25 6.54 99.48 0.65 -9.60 15 18 C -0.15 -6.30 6.38 -20.21 -0.13 -6.43 15 19 C -0.09 -3.59 9.68 22.20 0.21 -3.38 15 20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.06 1.37 8.07 -2.39 -0.02 1.35 15 22 H 0.09 1.39 8.08 -2.39 -0.02 1.37 15 23 H 0.18 2.63 8.06 -2.91 -0.02 2.60 15 24 H 0.16 3.33 8.06 -2.91 -0.02 3.30 15 25 H 0.23 7.11 8.06 -2.91 -0.02 7.08 15 26 H 0.04 1.95 7.20 -2.39 -0.02 1.93 15 27 H 0.02 1.21 7.57 -2.39 -0.02 1.19 15 28 H 0.27 15.76 8.31 -92.71 -0.77 14.99 15 29 H 0.11 4.45 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -72.49 256.54 6.00 -66.49 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.08 Total: 8.45 kcal Atomic # 6 Polarization: -55.97 SS G_CDS: 2.83 Total: -53.14 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.09 Total: -7.79 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -72.49 6.00 -66.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557524.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.241 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds