Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39403 * 120.14152 * 2 1 4 4 C 1.46784 * 134.36681 * 0.02562 * 3 2 1 5 5 C 1.33997 * 106.18555 * 180.02562 * 4 3 2 6 6 O 1.34455 * 110.15156 * 0.02562 * 5 4 3 7 7 C 1.34803 * 110.89135 * 359.97438 * 6 5 4 8 8 C 1.38945 * 133.49972 * 180.02562 * 7 6 5 9 9 C 1.37846 * 119.81609 * 180.28044 * 8 7 6 10 10 C 1.36733 * 120.14027 * 180.02562 * 2 1 3 11 11 C 1.50695 * 119.79472 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.46833 * 85.00372 * 11 10 2 13 13 H 1.08001 * 120.00139 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99734 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00214 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46976 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47102 * 119.99958 * 16 14 12 19 19 H 1.48503 * 109.46702 * 239.99917 * 16 14 12 20 20 H 1.08995 * 109.47514 * 90.00180 * 1 2 3 21 21 H 1.08999 * 109.46709 * 210.00080 * 1 2 3 22 22 H 1.08997 * 109.47135 * 329.99760 * 1 2 3 23 23 H 1.07996 * 126.90957 * 359.97438 * 4 3 2 24 24 H 1.07998 * 124.92905 * 179.97438 * 5 4 3 25 25 H 1.08002 * 120.08679 * 359.97438 * 8 7 6 26 26 H 1.08008 * 119.65237 * 179.71960 * 9 8 7 27 27 H 1.09000 * 109.47086 * 204.99863 * 11 10 2 28 28 H 1.09002 * 109.47192 * 325.00290 * 11 10 2 29 29 H 0.96999 * 120.00068 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2055 0.0000 4 6 1.8150 2.6201 0.0005 5 6 2.9553 3.3237 -0.0004 6 8 4.0124 2.4928 -0.0019 7 6 3.6119 1.2056 -0.0015 8 6 4.2902 -0.0071 -0.0022 9 6 3.5810 -1.1891 -0.0074 10 6 2.1936 -1.1825 -0.0005 11 6 1.4386 -2.4867 -0.0005 12 6 1.0794 -2.8591 -1.4159 13 1 1.3684 -2.2154 -2.2336 14 6 0.3807 -4.0210 -1.6669 15 7 0.0283 -4.8044 -0.6712 16 14 -0.0653 -4.4822 -3.4213 17 1 0.4422 -3.4414 -4.3509 18 1 0.5485 -5.7912 -3.7602 19 1 -1.5417 -4.5803 -3.5472 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 0.8096 3.0144 0.0006 24 1 3.0166 4.4020 -0.0007 25 1 5.3701 -0.0234 -0.0036 26 1 4.1110 -2.1302 -0.0124 27 1 2.0629 -3.2678 0.4333 28 1 0.5283 -2.3795 0.5893 29 1 -0.4629 -5.6220 -0.8478 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259565942.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = 13.445823 kcal Electronic energy + Delta-G solvation = -13758.799832 eV Core-core repulsion = 11419.796984 eV Total energy + Delta-G solvation = -2339.002848 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.95191 -37.93122 -33.30459 -32.79725 -31.37560 -29.71680 -27.17005 -25.92947 -23.35490 -22.02407 -20.57113 -19.99139 -16.83622 -16.42845 -16.28009 -15.64900 -14.86499 -14.25709 -13.64543 -13.06469 -13.01143 -12.63916 -12.27905 -12.17575 -11.79332 -11.36738 -11.08769 -10.87875 -10.64767 -10.58737 -10.15808 -9.67107 -9.55468 -9.37916 -8.42219 -7.77142 -7.46250 -6.04865 -4.08199 1.44696 2.06920 2.77737 3.21003 3.28603 3.36674 3.41807 4.31231 4.49084 4.88765 5.13207 5.29761 5.46115 5.67227 5.69837 5.88367 5.93178 6.19896 6.26371 6.34885 6.41030 6.66690 6.80416 6.88753 7.04056 7.18712 7.26690 7.53946 7.74313 7.83053 7.91611 8.31834 8.97055 9.55615 11.04789 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044911 B = 0.007687 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.309919 B = 3641.730963 C = 3791.673184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.043 4.043 3 C -0.134 4.134 4 C -0.205 4.205 5 C -0.015 4.015 6 O -0.204 6.204 7 C 0.029 3.971 8 C -0.124 4.124 9 C -0.083 4.083 10 C -0.057 4.057 11 C 0.050 3.950 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.048 0.952 23 H 0.150 0.850 24 H 0.199 0.801 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.027 0.973 28 H 0.035 0.965 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 11.838 1.823 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.043 4.043 3 C -0.134 4.134 4 C -0.224 4.224 5 C -0.080 4.080 6 O -0.106 6.106 7 C -0.017 4.017 8 C -0.143 4.143 9 C -0.101 4.101 10 C -0.057 4.057 11 C 0.014 3.986 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.089 0.911 21 H 0.099 0.901 22 H 0.067 0.933 23 H 0.168 0.832 24 H 0.216 0.784 25 H 0.139 0.861 26 H 0.149 0.851 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.061 11.743 1.859 12.563 hybrid contribution -0.420 -0.218 -1.026 1.130 sum 3.641 11.525 0.833 12.115 Atomic orbital electron populations 1.20721 0.91102 1.01913 1.02499 1.18951 0.96164 0.90094 0.99134 1.19780 0.92909 0.93482 1.07269 1.22443 0.99137 0.91697 1.09107 1.23723 0.84498 0.95569 1.04176 1.83914 1.34932 1.14711 1.77045 1.19531 0.93012 0.83457 1.05716 1.19802 0.99237 0.87870 1.07343 1.20953 0.94122 0.96502 0.98562 1.20206 0.93368 0.96915 0.95252 1.18371 0.94977 0.87454 0.97830 1.21070 1.35332 1.06236 0.91914 0.92524 1.24988 0.95849 0.96323 0.97068 1.69957 1.39352 1.13289 1.30722 0.86522 0.78137 0.78425 0.84915 1.19700 1.20964 1.20966 0.91080 0.90131 0.93321 0.83203 0.78402 0.86077 0.85068 0.95426 0.94674 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.52 36.01 0.34 -1.66 15 2 C -0.04 -0.89 5.87 -104.73 -0.61 -1.51 15 3 C -0.13 -2.53 6.15 -105.16 -0.65 -3.18 15 4 C -0.20 -3.10 10.87 -37.62 -0.41 -3.51 15 5 C -0.01 -0.20 11.96 29.24 0.35 0.15 15 6 O -0.20 -3.38 10.58 3.91 0.04 -3.34 15 7 C 0.03 0.54 7.42 -38.47 -0.29 0.26 15 8 C -0.12 -2.22 10.07 -39.46 -0.40 -2.62 15 9 C -0.08 -1.64 9.64 -39.54 -0.38 -2.02 15 10 C -0.06 -1.26 5.04 -104.98 -0.53 -1.79 15 11 C 0.05 1.27 4.58 -29.04 -0.13 1.13 15 12 C -0.51 -13.92 9.08 -34.44 -0.31 -14.23 15 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 15 N -0.89 -25.93 13.29 55.43 0.74 -25.19 15 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 20 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 21 H 0.08 1.62 5.99 -51.93 -0.31 1.31 15 22 H 0.05 0.77 7.92 -51.93 -0.41 0.36 15 23 H 0.15 1.88 8.06 -52.49 -0.42 1.45 15 24 H 0.20 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.12 1.81 8.06 -52.49 -0.42 1.38 15 26 H 0.13 2.38 8.06 -52.48 -0.42 1.96 15 27 H 0.03 0.73 8.05 -51.93 -0.42 0.31 15 28 H 0.04 0.92 6.12 -51.93 -0.32 0.60 15 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -30.35 254.87 -6.63 -36.98 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.11 Total: -1.17 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -3.11 Total: -27.43 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.74 Total: -25.19 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.35 -6.63 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259565942.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.425 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds