Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39403 * 120.14152 * 2 1 4 4 C 1.46784 * 134.36681 * 0.02562 * 3 2 1 5 5 C 1.33997 * 106.18555 * 180.02562 * 4 3 2 6 6 O 1.34455 * 110.15156 * 0.02562 * 5 4 3 7 7 C 1.34803 * 110.89135 * 359.97438 * 6 5 4 8 8 C 1.38945 * 133.49972 * 180.02562 * 7 6 5 9 9 C 1.37846 * 119.81609 * 180.28044 * 8 7 6 10 10 C 1.36733 * 120.14027 * 180.02562 * 2 1 3 11 11 C 1.50695 * 119.79472 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.46833 * 85.00372 * 11 10 2 13 13 H 1.08001 * 120.00139 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99734 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00214 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46976 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47102 * 119.99958 * 16 14 12 19 19 H 1.48503 * 109.46702 * 239.99917 * 16 14 12 20 20 H 1.08995 * 109.47514 * 90.00180 * 1 2 3 21 21 H 1.08999 * 109.46709 * 210.00080 * 1 2 3 22 22 H 1.08997 * 109.47135 * 329.99760 * 1 2 3 23 23 H 1.07996 * 126.90957 * 359.97438 * 4 3 2 24 24 H 1.07998 * 124.92905 * 179.97438 * 5 4 3 25 25 H 1.08002 * 120.08679 * 359.97438 * 8 7 6 26 26 H 1.08008 * 119.65237 * 179.71960 * 9 8 7 27 27 H 1.09000 * 109.47086 * 204.99863 * 11 10 2 28 28 H 1.09002 * 109.47192 * 325.00290 * 11 10 2 29 29 H 0.96999 * 120.00068 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2055 0.0000 4 6 1.8150 2.6201 0.0005 5 6 2.9553 3.3237 -0.0004 6 8 4.0124 2.4928 -0.0019 7 6 3.6119 1.2056 -0.0015 8 6 4.2902 -0.0071 -0.0022 9 6 3.5810 -1.1891 -0.0074 10 6 2.1936 -1.1825 -0.0005 11 6 1.4386 -2.4867 -0.0005 12 6 1.0794 -2.8591 -1.4159 13 1 1.3684 -2.2154 -2.2336 14 6 0.3807 -4.0210 -1.6669 15 7 0.0283 -4.8044 -0.6712 16 14 -0.0653 -4.4822 -3.4213 17 1 0.4422 -3.4414 -4.3509 18 1 0.5485 -5.7912 -3.7602 19 1 -1.5417 -4.5803 -3.5472 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 0.8096 3.0144 0.0006 24 1 3.0166 4.4020 -0.0007 25 1 5.3701 -0.0234 -0.0036 26 1 4.1110 -2.1302 -0.0124 27 1 2.0629 -3.2678 0.4333 28 1 0.5283 -2.3795 0.5893 29 1 -0.4629 -5.6220 -0.8478 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259565942.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = -3.441373 kcal Electronic energy + Delta-G solvation = -13759.532116 eV Core-core repulsion = 11419.796984 eV Total energy + Delta-G solvation = -2339.735132 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.24833 -39.44321 -35.28799 -34.18059 -33.03167 -31.19178 -28.88994 -27.49423 -25.24373 -23.36476 -22.12195 -21.34676 -18.50658 -18.12810 -17.71469 -16.94918 -16.69389 -15.94069 -15.08392 -14.73071 -14.48277 -14.07296 -13.87873 -13.62987 -13.39985 -13.24679 -12.83720 -12.53495 -12.43312 -12.36527 -11.79094 -11.44548 -11.35362 -10.93870 -10.56877 -9.25498 -8.90924 -8.17469 -6.29573 0.09099 0.54546 1.39154 1.40525 1.53129 1.56240 1.98521 2.40438 2.86167 3.13132 3.68703 3.85754 4.13663 4.23374 4.38344 4.50619 4.60488 4.76108 4.82307 4.91410 4.94033 5.21020 5.32591 5.33274 5.43274 5.49105 5.65993 5.77177 5.84298 6.06258 6.20260 6.35086 6.81929 7.38234 8.91467 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044911 B = 0.007687 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.309919 B = 3641.730963 C = 3791.673184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.225 4.225 5 C 0.013 3.987 6 O -0.206 6.206 7 C 0.014 3.986 8 C -0.113 4.113 9 C -0.101 4.101 10 C -0.086 4.086 11 C 0.062 3.938 12 C -0.518 4.518 13 H 0.048 0.952 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.960 3.040 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.276 1.276 20 H 0.064 0.936 21 H 0.057 0.943 22 H 0.079 0.921 23 H 0.176 0.824 24 H 0.256 0.744 25 H 0.153 0.847 26 H 0.136 0.864 27 H 0.003 0.997 28 H 0.015 0.985 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 14.347 0.993 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.062 4.062 3 C -0.148 4.148 4 C -0.244 4.244 5 C -0.051 4.051 6 O -0.109 6.109 7 C -0.033 4.033 8 C -0.131 4.131 9 C -0.119 4.119 10 C -0.087 4.087 11 C 0.025 3.975 12 C -0.556 4.556 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.568 5.568 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.202 1.202 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.097 0.903 23 H 0.193 0.807 24 H 0.272 0.728 25 H 0.171 0.829 26 H 0.154 0.846 27 H 0.021 0.979 28 H 0.034 0.966 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.656 14.261 1.032 15.037 hybrid contribution -0.555 -0.844 -0.719 1.239 sum 4.101 13.417 0.314 14.033 Atomic orbital electron populations 1.20647 0.90588 1.02244 1.02093 1.19087 0.96813 0.90496 0.99757 1.20148 0.93403 0.94746 1.06550 1.22780 1.01281 0.89635 1.10708 1.24816 0.82888 0.97314 1.00096 1.83951 1.36164 1.13968 1.76771 1.19747 0.93107 0.84564 1.05887 1.20032 1.00691 0.87091 1.05254 1.20993 0.93333 0.97768 0.99796 1.20020 0.94459 0.95920 0.98260 1.18094 0.94099 0.88887 0.96433 1.21292 1.35320 1.06310 0.92698 0.93322 1.25818 0.95689 0.96214 1.01235 1.70069 1.40088 1.13800 1.32891 0.85477 0.78077 0.78175 0.79823 1.19278 1.20259 1.20164 0.91771 0.92436 0.90261 0.80666 0.72799 0.82942 0.84624 0.97852 0.96647 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.81 9.52 71.24 0.68 -3.14 15 2 C -0.06 -2.56 5.87 -19.93 -0.12 -2.67 15 3 C -0.15 -5.39 6.15 -20.21 -0.12 -5.51 15 4 C -0.23 -6.04 10.87 23.54 0.26 -5.79 15 5 C 0.01 0.28 11.96 66.85 0.80 1.08 15 6 O -0.21 -6.09 10.58 -8.92 -0.09 -6.18 15 7 C 0.01 0.48 7.42 22.99 0.17 0.65 15 8 C -0.11 -3.90 10.07 22.35 0.23 -3.67 15 9 C -0.10 -4.04 9.64 22.30 0.21 -3.82 15 10 C -0.09 -3.95 5.04 -20.10 -0.10 -4.05 15 11 C 0.06 3.28 4.58 29.10 0.13 3.42 15 12 C -0.52 -29.44 9.08 25.60 0.23 -29.21 15 13 H 0.05 2.78 7.74 -2.91 -0.02 2.76 15 14 C 0.01 0.49 5.46 84.66 0.46 0.95 15 15 N -0.93 -55.36 13.29 21.45 0.28 -55.08 15 16 Si 0.96 44.30 29.54 68.60 2.03 46.32 15 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 20 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 21 H 0.06 2.43 5.99 -2.39 -0.01 2.42 15 22 H 0.08 2.46 7.92 -2.39 -0.02 2.44 15 23 H 0.18 3.68 8.06 -2.91 -0.02 3.66 15 24 H 0.26 2.45 8.06 -2.91 -0.02 2.43 15 25 H 0.15 4.19 8.06 -2.91 -0.02 4.16 15 26 H 0.14 5.10 8.06 -2.91 -0.02 5.08 15 27 H 0.00 0.18 8.05 -2.39 -0.02 0.16 15 28 H 0.02 0.87 6.12 -2.39 -0.01 0.85 15 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 Total: -1.00 -67.20 254.87 6.19 -61.00 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.15 Total: 5.70 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 2.83 Total: -51.76 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.09 Total: -6.18 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.20 6.19 -61.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259565942.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.560 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds