Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33993 * 126.90787 * 2 1 4 4 C 1.50700 * 124.92378 * 359.97438 * 3 2 1 5 5 C 1.50702 * 109.46869 * 89.99974 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 O 1.34455 * 110.15723 * 180.26841 * 3 2 1 14 14 C 1.34807 * 110.88586 * 359.57824 * 13 3 2 15 15 C 1.38942 * 133.49309 * 180.11795 * 14 13 3 16 16 C 1.37851 * 119.81471 * 180.33625 * 15 14 13 17 17 C 1.38741 * 120.68808 * 0.02562 * 16 15 14 18 18 C 1.36741 * 120.41704 * 359.97133 * 17 16 15 19 19 C 1.39400 * 119.71826 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47285 * 89.97111 * 1 2 3 21 21 H 1.09002 * 109.47227 * 209.97497 * 1 2 3 22 22 H 1.09000 * 109.47296 * 329.97606 * 1 2 3 23 23 H 1.09004 * 109.47210 * 330.00268 * 4 3 2 24 24 H 1.08994 * 109.47551 * 209.99920 * 4 3 2 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.07996 * 120.09318 * 0.36208 * 15 14 13 27 27 H 1.08002 * 119.65590 * 180.02562 * 16 15 14 28 28 H 1.07997 * 119.79406 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.14000 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0714 0.0000 4 6 1.8417 2.5033 -0.0006 5 6 1.6846 2.9809 1.4201 6 1 1.9035 2.3144 2.2413 7 6 1.2673 4.2708 1.6716 8 7 1.0011 5.0825 0.6717 9 14 1.0800 4.8651 3.4325 10 1 1.4391 3.7677 4.3663 11 1 1.9796 6.0242 3.6622 12 1 -0.3272 5.2764 3.6692 13 8 3.5991 0.6839 -0.0059 14 6 3.6964 -0.6606 -0.0008 15 6 4.7707 -1.5417 -0.0013 16 6 4.5422 -2.9012 -0.0019 17 6 3.2482 -3.4017 -0.0025 18 6 2.1771 -2.5516 -0.0020 19 6 2.3884 -1.1737 -0.0013 20 1 -0.3634 0.0005 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 0.8830 2.5709 -0.5147 24 1 2.5742 3.1259 -0.5142 25 1 0.7072 5.9898 0.8486 26 1 5.7819 -1.1626 -0.0008 27 1 5.3791 -3.5837 -0.0018 28 1 3.0858 -4.4694 -0.0026 29 1 1.1717 -2.9461 -0.0021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259569832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -7.750297 kcal Electronic energy + Delta-G solvation = -13666.014814 eV Core-core repulsion = 11326.092833 eV Total energy + Delta-G solvation = -2339.921981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.32800 -38.75329 -35.91636 -34.62193 -31.98622 -31.40958 -29.69192 -27.66395 -25.41606 -23.70157 -22.33156 -20.88864 -18.71405 -17.89052 -17.65640 -16.98360 -16.70033 -15.95045 -15.03856 -14.58064 -14.47042 -14.32223 -13.96700 -13.74477 -13.26416 -13.16479 -12.99614 -12.77731 -12.67285 -12.43484 -11.97391 -11.67144 -11.61147 -10.68794 -10.64386 -9.50134 -8.87078 -8.26882 -6.43326 0.07393 0.46896 1.37290 1.38435 1.48197 1.55120 1.94140 2.37637 2.83750 3.03071 3.60420 3.80407 4.09057 4.18964 4.35171 4.51733 4.59157 4.63071 4.84242 4.85900 5.06574 5.11181 5.13809 5.18588 5.40339 5.45804 5.56198 5.61752 5.68778 5.93689 6.00451 6.40593 6.64075 7.25353 8.80901 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.045356 B = 0.007375 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.183595 B = 3795.684201 C = 3948.293685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.214 4.214 3 C 0.048 3.952 4 C 0.094 3.906 5 C -0.537 4.537 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.274 1.274 12 H -0.269 1.269 13 O -0.220 6.220 14 C 0.002 3.998 15 C -0.121 4.121 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.086 4.086 19 C -0.139 4.139 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.011 0.989 25 H 0.270 0.730 26 H 0.142 0.858 27 H 0.173 0.827 28 H 0.167 0.833 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -15.644 -0.791 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.215 4.215 3 C 0.000 4.000 4 C 0.058 3.942 5 C -0.575 4.575 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.200 1.200 12 H -0.194 1.194 13 O -0.123 6.123 14 C -0.044 4.044 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.149 4.149 18 C -0.103 4.103 19 C -0.140 4.140 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.160 0.840 27 H 0.190 0.810 28 H 0.184 0.816 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.839 -15.294 -0.843 15.578 hybrid contribution -0.090 1.033 0.614 1.205 sum 2.748 -14.261 -0.229 14.525 Atomic orbital electron populations 1.20065 0.87303 1.02725 1.02260 1.21141 0.97787 0.90160 1.12437 1.23106 0.79662 0.98265 0.98918 1.17791 0.95782 0.82774 0.97883 1.21201 1.46784 0.98012 0.91457 0.93197 1.25857 0.94236 0.96270 1.02200 1.70051 1.45672 1.07402 1.33018 0.85316 0.78399 0.78194 0.78661 1.19414 1.19969 1.19370 1.83935 1.29309 1.22172 1.76926 1.20414 0.97441 0.81349 1.05204 1.20350 0.96316 0.92142 1.05125 1.21364 0.98862 0.92781 0.98040 1.21210 0.91572 1.01274 1.00810 1.20603 1.01375 0.89275 0.99087 1.20167 0.92176 0.95449 1.06207 0.90844 0.89963 0.92485 0.93520 0.97116 0.92064 0.84024 0.80953 0.81557 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.43 9.97 71.23 0.71 -1.71 15 2 C -0.21 -9.27 6.35 -18.60 -0.12 -9.39 15 3 C 0.05 2.38 6.42 24.72 0.16 2.54 15 4 C 0.09 5.25 5.09 29.10 0.15 5.39 15 5 C -0.54 -31.38 9.09 25.60 0.23 -31.15 15 6 H 0.05 2.95 7.74 -2.91 -0.02 2.93 15 7 C 0.01 0.79 5.46 84.66 0.46 1.25 15 8 N -0.92 -54.60 13.29 21.45 0.28 -54.32 15 9 Si 0.97 44.29 29.54 68.60 2.03 46.31 15 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 13 O -0.22 -10.78 10.58 -8.97 -0.09 -10.88 15 14 C 0.00 0.10 7.42 22.99 0.17 0.27 15 15 C -0.12 -3.65 10.07 22.35 0.23 -3.42 15 16 C -0.09 -2.05 10.01 22.30 0.22 -1.82 15 17 C -0.13 -2.84 9.98 22.04 0.22 -2.62 15 18 C -0.09 -2.42 10.05 22.20 0.22 -2.19 15 19 C -0.14 -5.34 6.38 -20.21 -0.13 -5.46 15 20 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 22 H 0.06 2.30 7.72 -2.39 -0.02 2.28 15 23 H 0.05 2.61 7.68 -2.38 -0.02 2.59 15 24 H 0.01 0.63 8.14 -2.39 -0.02 0.61 15 25 H 0.27 14.85 8.31 -92.70 -0.77 14.08 15 26 H 0.14 3.66 8.06 -2.91 -0.02 3.64 15 27 H 0.17 2.26 8.06 -2.91 -0.02 2.23 15 28 H 0.17 2.17 8.06 -2.91 -0.02 2.15 15 29 H 0.14 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -68.31 259.13 5.88 -62.43 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.14 Total: 4.77 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.53 Total: -48.32 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.28 Total: -54.32 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.09 Total: -10.88 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -68.31 5.88 -62.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259569832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.682 kcal (2) G-P(sol) polarization free energy of solvation -68.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds