Wall clock time and date at job start Mon Mar 30 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37862 * 119.65588 * 2 1 4 4 C 1.38878 * 119.95843 * 180.02562 * 3 2 1 5 5 O 1.34833 * 133.42033 * 180.02562 * 4 3 2 6 6 C 1.34452 * 110.89666 * 179.97438 * 5 4 3 7 7 C 1.33986 * 110.15763 * 359.97438 * 6 5 4 8 8 C 1.40509 * 119.32029 * 359.93187 * 4 3 2 9 9 C 1.39386 * 120.15810 * 0.04472 * 8 4 3 10 10 C 1.37760 * 119.59520 * 0.02562 * 9 8 4 11 11 C 1.50703 * 119.86027 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47154 * 264.99943 * 11 10 9 13 13 H 1.08000 * 119.99738 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99890 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00230 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99887 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47165 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47322 * 119.99854 * 16 14 12 19 19 H 1.48503 * 109.47192 * 240.00183 * 16 14 12 20 20 H 1.08998 * 109.46892 * 270.02513 * 1 2 3 21 21 H 1.08996 * 109.46669 * 30.02676 * 1 2 3 22 22 H 1.08997 * 109.46722 * 150.02456 * 1 2 3 23 23 H 1.07996 * 120.01736 * 359.97113 * 3 2 1 24 24 H 1.08002 * 124.91868 * 180.02562 * 6 5 4 25 25 H 1.08004 * 126.90368 * 180.26569 * 7 6 5 26 26 H 1.07999 * 120.20207 * 180.02562 * 9 8 4 27 27 H 1.09010 * 109.46885 * 24.99838 * 11 10 9 28 28 H 1.08999 * 109.47432 * 144.99673 * 11 10 9 29 29 H 0.96998 * 119.99862 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1980 0.0000 4 6 3.5779 1.2054 -0.0005 5 8 4.4995 2.1896 -0.0002 6 6 5.7442 1.6811 -0.0005 7 6 5.6959 0.3421 -0.0004 8 6 4.2724 -0.0161 0.0004 9 6 3.5709 -1.2205 0.0009 10 6 2.1934 -1.2055 -0.0001 11 6 1.4289 -2.5042 0.0010 12 6 1.0683 -2.8761 -1.4142 13 1 1.3628 -2.2358 -2.2325 14 6 0.3614 -4.0331 -1.6641 15 7 0.0022 -4.8126 -0.6675 16 14 -0.0850 -4.4944 -3.4183 17 1 0.4319 -3.4592 -4.3491 18 1 0.5196 -5.8086 -3.7537 19 1 -1.5619 -4.5817 -3.5467 20 1 -0.3633 0.0005 1.0277 21 1 -0.3632 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 1.6438 2.1302 -0.0005 24 1 6.6514 2.2671 0.0000 25 1 6.5356 -0.3371 0.0034 26 1 4.1040 -2.1598 0.0020 27 1 2.0470 -3.2893 0.4368 28 1 0.5187 -2.3896 0.5897 29 1 -0.4947 -5.6268 -0.8435 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259576939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:11 Heat of formation + Delta-G solvation = 10.934422 kcal Electronic energy + Delta-G solvation = -13683.267577 eV Core-core repulsion = 11344.155825 eV Total energy + Delta-G solvation = -2339.111751 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.92579 -37.95502 -33.31374 -32.72392 -30.91854 -30.34303 -27.06298 -25.88005 -23.51291 -21.51063 -20.83804 -20.11744 -17.00200 -16.36851 -16.04140 -15.63931 -14.76557 -14.28005 -13.77473 -13.26736 -13.02884 -12.61205 -12.25569 -12.04758 -11.56390 -11.52130 -11.16272 -10.92584 -10.68181 -10.51538 -10.20616 -9.66392 -9.58264 -9.40838 -8.44447 -7.61798 -7.59527 -6.06162 -4.10045 1.44126 2.05701 2.76666 3.20273 3.28101 3.36280 3.41468 4.29717 4.47908 4.87827 5.15038 5.28225 5.45910 5.63877 5.69223 5.82539 5.99289 6.10584 6.26680 6.35608 6.41401 6.67273 6.82011 6.90444 7.03473 7.20585 7.25531 7.52190 7.73292 7.80600 7.90201 8.30145 8.95800 9.54054 11.03304 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.041918 B = 0.007635 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.806109 B = 3666.236135 C = 3897.696249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 C -0.121 4.121 4 C 0.030 3.970 5 O -0.204 6.204 6 C -0.014 4.014 7 C -0.208 4.208 8 C -0.139 4.139 9 C -0.080 4.080 10 C -0.051 4.051 11 C 0.051 3.949 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 H 0.064 0.936 21 H 0.055 0.945 22 H 0.097 0.903 23 H 0.121 0.879 24 H 0.199 0.801 25 H 0.151 0.849 26 H 0.123 0.877 27 H 0.027 0.973 28 H 0.035 0.965 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 10.095 1.777 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.016 4.016 5 O -0.107 6.107 6 C -0.079 4.079 7 C -0.227 4.227 8 C -0.140 4.140 9 C -0.098 4.098 10 C -0.051 4.051 11 C 0.014 3.986 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.116 0.884 23 H 0.139 0.861 24 H 0.216 0.784 25 H 0.169 0.831 26 H 0.141 0.859 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.437 10.205 1.814 12.201 hybrid contribution 0.076 -0.472 -0.980 1.090 sum 6.512 9.733 0.834 11.740 Atomic orbital electron populations 1.20875 0.90517 1.03859 1.01987 1.19626 0.96384 0.91167 0.97801 1.19643 0.88120 0.98498 1.07694 1.19483 0.90885 0.85537 1.05683 1.83919 1.14353 1.35279 1.77135 1.23722 0.85995 0.94083 1.04078 1.22481 0.95644 0.95298 1.09276 1.19924 0.92639 0.94288 1.07099 1.20446 0.93550 0.95626 1.00226 1.20480 0.93001 0.96988 0.94615 1.18350 0.94881 0.87537 0.97835 1.21074 1.35053 1.06739 0.91907 0.92430 1.24996 0.95836 0.96273 0.97108 1.69964 1.38907 1.13590 1.30726 0.86516 0.78143 0.78452 0.84854 1.19658 1.20969 1.20925 0.91735 0.92623 0.88414 0.86096 0.78387 0.83146 0.85930 0.95438 0.94722 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 9.19 36.01 0.33 -1.74 15 2 C -0.05 -0.99 5.88 -104.58 -0.61 -1.60 15 3 C -0.12 -2.21 9.69 -39.48 -0.38 -2.60 15 4 C 0.03 0.57 7.41 -38.49 -0.29 0.28 15 5 O -0.20 -3.42 10.58 3.83 0.04 -3.37 15 6 C -0.01 -0.19 11.96 29.24 0.35 0.16 15 7 C -0.21 -3.16 11.14 -37.62 -0.42 -3.57 15 8 C -0.14 -2.64 6.40 -105.16 -0.67 -3.31 15 9 C -0.08 -1.66 9.72 -39.33 -0.38 -2.05 15 10 C -0.05 -1.12 5.07 -104.62 -0.53 -1.65 15 11 C 0.05 1.28 4.41 -29.03 -0.13 1.15 15 12 C -0.51 -13.90 8.30 -34.44 -0.29 -14.19 15 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 15 N -0.89 -25.79 13.29 55.43 0.74 -25.06 15 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 15 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 20 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 21 H 0.05 0.85 8.08 -51.93 -0.42 0.43 15 22 H 0.10 2.01 6.11 -51.93 -0.32 1.69 15 23 H 0.12 1.88 8.06 -52.49 -0.42 1.45 15 24 H 0.20 1.65 8.06 -52.49 -0.42 1.23 15 25 H 0.15 1.86 8.06 -52.48 -0.42 1.44 15 26 H 0.12 2.43 8.06 -52.49 -0.42 2.00 15 27 H 0.03 0.73 8.05 -51.92 -0.42 0.31 15 28 H 0.03 0.90 6.96 -51.93 -0.36 0.53 15 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 254.96 15.07 3.84 3.84 Total: -1.00 -30.14 254.96 -6.69 -36.83 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.17 Total: -0.87 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.12 Total: -27.57 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.14 -6.69 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.762 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds