Wall clock time and date at job start Mon Mar 30 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47295 * 240.00559 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47035 * 119.99959 * 3 2 1 7 7 C 1.40059 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00161 * 180.27603 * 7 2 1 9 9 C 1.40645 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.47613 * 128.82607 * 0.03061 * 9 7 2 11 11 N 1.29751 * 105.55342 * 179.97438 * 10 9 7 12 12 O 1.20521 * 113.41875 * 0.02562 * 11 10 9 13 13 C 1.34482 * 113.19673 * 359.71285 * 12 11 10 14 14 C 1.47034 * 127.26068 * 180.30556 * 13 12 11 15 15 C 1.39976 * 119.77612 * 0.17377 * 14 13 12 16 16 C 1.38302 * 119.02006 * 179.97438 * 15 14 13 17 17 C 1.38863 * 118.55056 * 359.97438 * 16 15 14 18 18 C 1.38506 * 119.46426 * 0.02562 * 17 16 15 19 19 N 1.31577 * 120.95447 * 359.73820 * 18 17 16 20 20 H 0.97000 * 120.00493 * 359.97438 * 1 2 3 21 21 H 1.08003 * 127.22542 * 359.97438 * 10 9 7 22 22 H 1.07992 * 120.49027 * 359.97438 * 15 14 13 23 23 H 1.07994 * 120.72053 * 180.02562 * 16 15 14 24 24 H 1.07998 * 120.27042 * 180.02562 * 17 16 15 25 25 H 1.07999 * 119.52560 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0085 -1.2129 -0.0005 8 1 3.0884 -1.2130 0.0040 9 6 1.3052 -2.4309 -0.0005 10 6 -0.1535 -2.6574 -0.0006 11 7 -0.3055 -3.9460 -0.0012 12 8 0.7367 -4.5512 -0.0009 13 6 1.8155 -3.7484 -0.0063 14 6 3.2283 -4.1558 -0.0139 15 6 3.5596 -5.5158 -0.0197 16 6 4.8934 -5.8814 -0.0273 17 6 5.8559 -4.8804 -0.0294 18 6 5.4589 -3.5535 -0.0233 19 7 4.1839 -3.2285 -0.0208 20 1 -0.4851 0.8400 0.0004 21 1 -0.9310 -1.9078 -0.0003 22 1 2.7851 -6.2684 -0.0183 23 1 5.1800 -6.9226 -0.0323 24 1 6.9056 -5.1345 -0.0357 25 1 6.2067 -2.7742 -0.0245 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259603843.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:25 Heat of formation + Delta-G solvation = 61.767849 kcal Electronic energy + Delta-G solvation = -13555.496904 eV Core-core repulsion = 11115.049113 eV Total energy + Delta-G solvation = -2440.447792 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.59927 -40.49459 -36.33627 -33.63456 -33.36400 -32.89213 -30.63541 -28.11031 -24.57490 -24.26156 -22.97415 -21.48379 -19.60310 -18.24936 -17.78331 -17.00991 -16.63217 -16.59971 -15.96476 -15.09543 -14.56365 -14.44810 -14.07387 -13.41379 -13.19026 -13.09729 -12.80827 -12.35566 -11.93624 -11.61262 -11.45893 -10.88583 -10.57863 -10.40654 -9.96298 -9.20481 -8.89697 -6.45615 -0.00809 0.63065 1.26814 1.38723 1.49238 1.53055 1.95135 2.16171 2.67362 3.07364 3.35658 3.98542 4.07699 4.16255 4.29630 4.47301 4.58839 4.59777 4.95403 5.08814 5.15019 5.22970 5.46681 5.59564 5.61606 6.06471 6.39506 6.50734 6.67267 7.39306 8.04290 8.11326 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.011470 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.862555 B = 2440.475604 C = 3424.490039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.024 3.976 3 Si 1.006 2.994 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.400 4.400 8 H 0.112 0.888 9 C 0.021 3.979 10 C -0.059 4.059 11 N -0.383 5.383 12 O 0.062 5.938 13 C -0.271 4.271 14 C 0.239 3.761 15 C -0.212 4.212 16 C -0.059 4.059 17 C -0.210 4.210 18 C 0.100 3.900 19 N -0.523 5.523 20 H 0.301 0.699 21 H 0.198 0.802 22 H 0.128 0.872 23 H 0.165 0.835 24 H 0.167 0.833 25 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.421 -1.705 -0.033 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.193 4.193 3 Si 0.825 3.175 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.428 4.428 8 H 0.130 0.870 9 C 0.014 3.986 10 C -0.241 4.241 11 N -0.086 5.086 12 O -0.008 6.008 13 C -0.330 4.330 14 C 0.106 3.894 15 C -0.233 4.233 16 C -0.085 4.085 17 C -0.230 4.230 18 C -0.059 4.059 19 N -0.235 5.235 20 H 0.112 0.888 21 H 0.215 0.785 22 H 0.146 0.854 23 H 0.183 0.817 24 H 0.185 0.815 25 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.883 -1.487 -0.035 8.022 hybrid contribution 0.310 0.373 0.004 0.485 sum 8.193 -1.115 -0.031 8.268 Atomic orbital electron populations 1.69565 1.09326 1.32068 1.32530 1.27276 0.95868 1.05586 0.90612 0.84868 0.78489 0.73676 0.80464 1.18067 1.18361 1.18071 1.19721 0.96695 0.88568 1.37822 0.87047 1.20533 0.90813 0.93356 0.93851 1.26771 0.98240 0.91346 1.07735 1.72835 1.07603 1.10480 1.17730 1.84117 1.09400 1.34142 1.73178 1.21549 0.87692 0.88776 1.34962 1.18054 0.87669 0.89858 0.93774 1.22086 0.98734 0.95258 1.07232 1.21756 0.91144 1.01497 0.94053 1.22375 1.01865 0.93115 1.05669 1.23243 0.91556 0.97082 0.94048 1.67555 1.01758 1.38139 1.16072 0.88776 0.78499 0.85383 0.81734 0.81528 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.59 10.64 21.85 0.23 -39.36 15 2 C 0.02 1.17 5.50 85.29 0.47 1.64 15 3 Si 1.01 36.33 29.56 68.60 2.03 38.36 15 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 5 H -0.26 -8.59 7.11 99.48 0.71 -7.89 15 6 H -0.26 -9.07 7.11 99.48 0.71 -8.37 15 7 C -0.40 -21.61 9.02 23.30 0.21 -21.40 15 8 H 0.11 5.93 6.20 -2.91 -0.02 5.91 15 9 C 0.02 1.21 6.26 -19.46 -0.12 1.08 15 10 C -0.06 -3.26 11.24 87.48 0.98 -2.28 15 11 N -0.38 -20.91 11.92 -52.68 -0.63 -21.53 15 12 O 0.06 3.36 10.91 67.87 0.74 4.10 15 13 C -0.27 -14.75 7.32 25.33 0.19 -14.57 15 14 C 0.24 11.30 6.74 41.67 0.28 11.59 15 15 C -0.21 -8.11 9.79 22.71 0.22 -7.89 15 16 C -0.06 -1.70 10.16 22.43 0.23 -1.47 15 17 C -0.21 -5.61 10.12 22.48 0.23 -5.38 15 18 C 0.10 3.31 11.18 84.80 0.95 4.25 15 19 N -0.52 -23.36 8.23 -185.17 -1.52 -24.88 15 20 H 0.30 12.96 8.30 -92.71 -0.77 12.19 15 21 H 0.20 10.69 6.29 -2.91 -0.02 10.67 15 22 H 0.13 4.69 7.96 -2.91 -0.02 4.67 15 23 H 0.17 3.26 8.06 -2.91 -0.02 3.23 15 24 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 25 H 0.18 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -64.03 232.83 5.70 -58.33 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.22 Total: 19.41 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.63 Total: -34.42 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.92 Total: -85.78 kcal Atomic # 8 Polarization: 3.36 SS G_CDS: 0.74 Total: 4.10 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -64.03 5.70 -58.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259603843.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.100 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds