Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33936 * 124.87150 * 2 1 4 4 C 1.46916 * 106.14778 * 179.97438 * 3 2 1 5 5 C 1.40896 * 105.46309 * 0.26587 * 4 3 2 6 6 C 1.39437 * 119.71150 * 180.34370 * 5 4 3 7 7 C 1.36159 * 120.41555 * 359.45607 * 6 5 4 8 8 C 1.41047 * 120.58740 * 0.25416 * 7 6 5 9 9 C 1.41355 * 120.13174 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00049 * 153.78681 * 9 8 7 11 11 C 1.39885 * 120.00393 * 333.78963 * 9 8 7 12 12 N 1.30876 * 119.99524 * 343.31626 * 11 9 8 13 13 Si 1.86795 * 120.00061 * 163.31861 * 11 9 8 14 14 H 1.48494 * 109.47357 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47284 * 120.00389 * 13 11 9 16 16 H 1.48506 * 109.46909 * 239.99710 * 13 11 9 17 17 C 1.38809 * 134.23840 * 179.97438 * 4 3 2 18 18 C 1.50701 * 120.37416 * 359.97438 * 17 4 3 19 19 O 1.34442 * 124.87138 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.47447 * 89.99667 * 1 2 3 21 21 H 1.09003 * 109.47183 * 209.99540 * 1 2 3 22 22 H 1.09003 * 109.47476 * 329.99638 * 1 2 3 23 23 H 1.08001 * 126.92754 * 359.97438 * 3 2 1 24 24 H 1.07997 * 119.79457 * 179.73228 * 6 5 4 25 25 H 1.07999 * 119.70420 * 180.27442 * 7 6 5 26 26 H 0.97003 * 120.00266 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.47102 * 270.02024 * 18 17 4 28 28 H 1.09000 * 109.46930 * 30.02585 * 18 17 4 29 29 H 1.09001 * 109.46784 * 150.01722 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2727 1.0989 0.0000 4 6 3.6641 0.6272 0.0006 5 6 3.5840 -0.7794 -0.0053 6 6 4.7537 -1.5383 0.0010 7 6 5.9711 -0.9284 0.0017 8 6 6.0689 0.4787 0.0015 9 6 7.3377 1.1018 0.0017 10 1 7.4527 2.0929 -0.4116 11 6 8.4446 0.4346 0.5371 12 7 8.2695 -0.6000 1.3192 13 14 10.1723 1.0205 0.1358 14 1 10.0987 2.1999 -0.7635 15 1 10.8713 1.3971 1.3907 16 1 10.9205 -0.0702 -0.5393 17 6 4.9005 1.2582 0.0005 18 6 4.9882 2.7627 -0.0011 19 8 2.2756 -1.1030 0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.9354 2.1248 -0.0004 24 1 4.6939 -2.6166 0.0008 25 1 6.8698 -1.5274 0.0021 26 1 9.0370 -1.0629 1.6903 27 1 5.0094 3.1243 -1.0291 28 1 4.1209 3.1777 0.5123 29 1 5.8978 3.0741 0.5125 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259606226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = 4.618074 kcal Electronic energy + Delta-G solvation = -13840.246126 eV Core-core repulsion = 11500.860478 eV Total energy + Delta-G solvation = -2339.385648 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.14475 -36.94054 -33.42929 -32.57846 -30.97185 -29.96119 -27.26607 -25.09718 -24.65996 -21.10149 -20.21396 -19.34860 -17.36883 -15.83077 -15.24373 -15.17713 -14.99607 -13.81330 -12.94688 -12.76403 -12.74296 -12.50944 -12.32447 -11.92387 -11.82420 -11.49518 -11.27326 -11.07802 -10.83980 -10.62142 -10.14563 -9.83644 -9.34215 -9.14737 -8.86545 -7.21247 -6.94367 -6.71505 -4.33957 2.20930 2.72906 3.06694 3.11878 3.16048 3.49652 3.80037 3.91984 4.54998 5.29781 5.54009 5.61798 5.69867 5.87041 5.93713 6.15995 6.28161 6.43925 6.67075 6.69548 6.75810 6.87817 7.03471 7.18192 7.23261 7.44716 7.67692 7.75151 7.93664 8.10606 8.31246 8.52969 8.84869 8.89894 10.16651 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056821 B = 0.008131 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.659602 B = 3442.940674 C = 3849.838808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.002 4.002 3 C -0.221 4.221 4 C -0.088 4.088 5 C -0.053 4.053 6 C -0.105 4.105 7 C -0.110 4.110 8 C 0.103 3.897 9 C -0.456 4.456 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.799 5.799 13 Si 0.908 3.092 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.272 1.272 17 C -0.181 4.181 18 C -0.077 4.077 19 O -0.207 6.207 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.137 0.863 24 H 0.099 0.901 25 H 0.132 0.868 26 H 0.281 0.719 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 1.449 -1.622 6.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.050 4.050 3 C -0.241 4.241 4 C -0.088 4.088 5 C -0.098 4.098 6 C -0.124 4.124 7 C -0.129 4.129 8 C 0.100 3.900 9 C -0.486 4.486 10 H 0.100 0.900 11 C -0.142 4.142 12 N -0.425 5.425 13 Si 0.733 3.267 14 H -0.184 1.184 15 H -0.200 1.200 16 H -0.197 1.197 17 C -0.183 4.183 18 C -0.134 4.134 19 O -0.111 6.111 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.155 0.845 24 H 0.117 0.883 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.746 1.013 -1.470 6.017 hybrid contribution 0.856 0.271 -0.027 0.898 sum -4.891 1.284 -1.497 5.273 Atomic orbital electron populations 1.20226 0.86498 1.03189 1.02683 1.21876 0.93158 0.84931 1.05031 1.22046 0.92168 0.97814 1.12084 1.19392 0.92569 0.92491 1.04387 1.19368 0.81540 0.93775 1.15135 1.19318 0.88786 0.97385 1.06868 1.21021 0.95045 0.95492 1.01312 1.17383 0.91999 0.91132 0.89470 1.19526 0.91657 1.02664 1.34729 0.89967 1.25917 1.01610 0.94082 0.92628 1.69826 1.33172 1.17401 1.22145 0.86255 0.81347 0.79881 0.79231 1.18375 1.20018 1.19722 1.19114 0.90243 0.94458 1.14492 1.20276 1.00522 0.93102 0.99478 1.83692 1.16224 1.33285 1.77871 0.90833 0.91182 0.90078 0.84550 0.88312 0.85081 0.90849 0.94160 0.94423 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.38 36.00 0.37 -0.53 15 2 C 0.00 -0.03 7.22 -35.82 -0.26 -0.29 15 3 C -0.22 -4.60 10.73 -37.58 -0.40 -5.00 15 4 C -0.09 -2.16 6.15 -105.17 -0.65 -2.81 15 5 C -0.05 -1.31 7.43 -38.13 -0.28 -1.60 15 6 C -0.10 -2.58 9.99 -39.88 -0.40 -2.98 15 7 C -0.11 -2.86 8.60 -39.26 -0.34 -3.19 15 8 C 0.10 2.74 5.56 -106.81 -0.59 2.15 15 9 C -0.46 -11.86 8.11 -37.78 -0.31 -12.17 15 10 H 0.08 2.06 6.90 -52.49 -0.36 1.70 15 11 C 0.07 1.84 5.14 -17.34 -0.09 1.75 15 12 N -0.80 -20.32 10.99 55.54 0.61 -19.71 15 13 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 15 14 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 17 C -0.18 -4.59 5.97 -103.57 -0.62 -5.21 15 18 C -0.08 -1.67 9.36 36.01 0.34 -1.34 15 19 O -0.21 -4.71 10.57 4.00 0.04 -4.67 15 20 H 0.07 0.83 8.14 -51.92 -0.42 0.41 15 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.14 2.43 8.06 -52.49 -0.42 2.01 15 24 H 0.10 2.17 8.06 -52.49 -0.42 1.74 15 25 H 0.13 3.41 6.21 -52.49 -0.33 3.09 15 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 15 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 28 H 0.04 0.74 7.92 -51.93 -0.41 0.33 15 29 H 0.06 1.33 6.80 -51.93 -0.35 0.98 15 LS Contribution 251.92 15.07 3.80 3.80 Total: -1.00 -28.81 251.92 -6.93 -35.74 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -3.12 Total: 2.71 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -3.22 Total: -31.22 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: 0.04 Total: -4.67 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.81 -6.93 -35.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259606226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.359 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds