Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33936 * 124.87150 * 2 1 4 4 C 1.46916 * 106.14778 * 179.97438 * 3 2 1 5 5 C 1.40896 * 105.46309 * 0.26587 * 4 3 2 6 6 C 1.39437 * 119.71150 * 180.34370 * 5 4 3 7 7 C 1.36159 * 120.41555 * 359.45607 * 6 5 4 8 8 C 1.41047 * 120.58740 * 0.25416 * 7 6 5 9 9 C 1.41355 * 120.13174 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00049 * 153.78681 * 9 8 7 11 11 C 1.39885 * 120.00393 * 333.78963 * 9 8 7 12 12 N 1.30876 * 119.99524 * 343.31626 * 11 9 8 13 13 Si 1.86795 * 120.00061 * 163.31861 * 11 9 8 14 14 H 1.48494 * 109.47357 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47284 * 120.00389 * 13 11 9 16 16 H 1.48506 * 109.46909 * 239.99710 * 13 11 9 17 17 C 1.38809 * 134.23840 * 179.97438 * 4 3 2 18 18 C 1.50701 * 120.37416 * 359.97438 * 17 4 3 19 19 O 1.34442 * 124.87138 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.47447 * 89.99667 * 1 2 3 21 21 H 1.09003 * 109.47183 * 209.99540 * 1 2 3 22 22 H 1.09003 * 109.47476 * 329.99638 * 1 2 3 23 23 H 1.08001 * 126.92754 * 359.97438 * 3 2 1 24 24 H 1.07997 * 119.79457 * 179.73228 * 6 5 4 25 25 H 1.07999 * 119.70420 * 180.27442 * 7 6 5 26 26 H 0.97003 * 120.00266 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.47102 * 270.02024 * 18 17 4 28 28 H 1.09000 * 109.46930 * 30.02585 * 18 17 4 29 29 H 1.09001 * 109.46784 * 150.01722 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2727 1.0989 0.0000 4 6 3.6641 0.6272 0.0006 5 6 3.5840 -0.7794 -0.0053 6 6 4.7537 -1.5383 0.0010 7 6 5.9711 -0.9284 0.0017 8 6 6.0689 0.4787 0.0015 9 6 7.3377 1.1018 0.0017 10 1 7.4527 2.0929 -0.4116 11 6 8.4446 0.4346 0.5371 12 7 8.2695 -0.6000 1.3192 13 14 10.1723 1.0205 0.1358 14 1 10.0987 2.1999 -0.7635 15 1 10.8713 1.3971 1.3907 16 1 10.9205 -0.0702 -0.5393 17 6 4.9005 1.2582 0.0005 18 6 4.9882 2.7627 -0.0011 19 8 2.2756 -1.1030 0.0005 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.9354 2.1248 -0.0004 24 1 4.6939 -2.6166 0.0008 25 1 6.8698 -1.5274 0.0021 26 1 9.0370 -1.0629 1.6903 27 1 5.0094 3.1243 -1.0291 28 1 4.1209 3.1777 0.5123 29 1 5.8978 3.0741 0.5125 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259606226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -10.687771 kcal Electronic energy + Delta-G solvation = -13840.909837 eV Core-core repulsion = 11500.860478 eV Total energy + Delta-G solvation = -2340.049360 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.87497 -38.79973 -35.30042 -34.21321 -32.65208 -31.66680 -28.96326 -26.77238 -26.48441 -22.93184 -21.95428 -21.09939 -19.22405 -17.63383 -17.06699 -16.86831 -16.65785 -15.54559 -14.70283 -14.28520 -14.22365 -13.94447 -13.69601 -13.62810 -13.51191 -13.19831 -12.86263 -12.81541 -12.54670 -12.27121 -11.98854 -11.62453 -11.18809 -11.00674 -10.56911 -9.13586 -8.75019 -8.53578 -6.29562 0.46004 0.88855 1.40717 1.49172 1.55904 1.76725 2.18011 2.23169 2.67379 3.60054 3.87493 4.15433 4.39106 4.52249 4.62783 4.68421 4.77073 4.88445 4.90720 5.01110 5.06675 5.11124 5.20801 5.32708 5.52628 5.63694 5.84414 5.88837 6.06497 6.20159 6.47461 6.63092 6.92775 6.98243 8.34245 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.056821 B = 0.008131 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.659602 B = 3442.940674 C = 3849.838808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.013 3.987 3 C -0.241 4.241 4 C -0.107 4.107 5 C -0.081 4.081 6 C -0.109 4.109 7 C -0.135 4.135 8 C 0.073 3.927 9 C -0.484 4.484 10 H 0.083 0.917 11 C 0.035 3.965 12 N -0.830 5.830 13 Si 0.983 3.017 14 H -0.257 1.257 15 H -0.267 1.267 16 H -0.265 1.265 17 C -0.203 4.203 18 C -0.070 4.070 19 O -0.219 6.219 20 H 0.098 0.902 21 H 0.084 0.916 22 H 0.110 0.890 23 H 0.167 0.833 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.289 0.711 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 2.384 -1.831 7.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.035 4.035 3 C -0.261 4.261 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.127 4.127 7 C -0.154 4.154 8 C 0.070 3.930 9 C -0.513 4.513 10 H 0.101 0.899 11 C -0.179 4.179 12 N -0.457 5.457 13 Si 0.804 3.196 14 H -0.180 1.180 15 H -0.192 1.192 16 H -0.190 1.190 17 C -0.205 4.205 18 C -0.126 4.126 19 O -0.123 6.123 20 H 0.116 0.884 21 H 0.102 0.898 22 H 0.129 0.871 23 H 0.185 0.815 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.967 1.946 -1.678 7.426 hybrid contribution 1.047 -0.050 0.053 1.049 sum -5.920 1.896 -1.625 6.426 Atomic orbital electron populations 1.20544 0.81511 1.05362 1.04903 1.23105 0.95668 0.83512 1.01171 1.22374 0.90179 0.99860 1.13642 1.19900 0.94287 0.92849 1.03724 1.19566 0.82550 0.94326 1.16218 1.19499 0.88725 0.98407 1.06091 1.20972 0.95259 0.95602 1.03599 1.17787 0.93152 0.91770 0.90260 1.19748 0.92419 1.03191 1.35966 0.89856 1.26778 1.05426 0.93957 0.91784 1.69880 1.34791 1.18376 1.22634 0.85134 0.75863 0.79449 0.79138 1.18019 1.19204 1.18957 1.19579 0.90321 0.96300 1.14267 1.20238 1.01013 0.90978 1.00394 1.83706 1.15475 1.34949 1.78153 0.88366 0.89758 0.87149 0.81537 0.86565 0.86107 0.90032 0.92919 0.92495 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.38 71.23 0.74 -0.71 15 2 C 0.01 0.48 7.22 24.70 0.18 0.66 15 3 C -0.24 -9.53 10.73 23.56 0.25 -9.27 15 4 C -0.11 -5.28 6.15 -20.22 -0.12 -5.40 15 5 C -0.08 -4.09 7.43 23.21 0.17 -3.92 15 6 C -0.11 -5.52 9.99 22.07 0.22 -5.30 15 7 C -0.14 -7.35 8.60 22.47 0.19 -7.16 15 8 C 0.07 4.02 5.56 -21.28 -0.12 3.90 15 9 C -0.48 -25.84 8.11 23.44 0.19 -25.65 15 10 H 0.08 4.26 6.90 -2.91 -0.02 4.24 15 11 C 0.03 1.74 5.14 85.23 0.44 2.18 15 12 N -0.83 -43.22 10.99 21.82 0.24 -42.98 15 13 Si 0.98 37.78 29.59 68.60 2.03 39.81 15 14 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 15 H -0.27 -9.87 7.11 99.48 0.71 -9.17 15 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 17 C -0.20 -10.43 5.97 -19.18 -0.11 -10.55 15 18 C -0.07 -3.00 9.36 71.24 0.67 -2.33 15 19 O -0.22 -9.75 10.57 -8.59 -0.09 -9.84 15 20 H 0.10 1.73 8.14 -2.38 -0.02 1.72 15 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.17 5.39 8.06 -2.91 -0.02 5.36 15 24 H 0.12 5.25 8.06 -2.91 -0.02 5.23 15 25 H 0.12 6.64 6.21 -2.91 -0.02 6.62 15 26 H 0.29 13.53 8.30 -92.71 -0.77 12.76 15 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 28 H 0.06 2.16 7.92 -2.39 -0.02 2.15 15 29 H 0.05 2.37 6.80 -2.39 -0.02 2.35 15 Total: -1.00 -63.86 251.92 6.03 -57.84 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.15 Total: 18.72 kcal Atomic # 6 Polarization: -66.25 SS G_CDS: 2.70 Total: -63.55 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.24 Total: -42.98 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.09 Total: -9.84 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -63.86 6.03 -57.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259606226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.149 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds