Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.38672 * 329.80343 * 4 3 2 6 6 C 1.53093 * 109.39012 * 89.50291 * 4 3 2 7 7 S 1.81752 * 108.84344 * 57.12235 * 6 4 3 8 8 C 1.81750 * 102.21717 * 53.26724 * 7 6 4 9 9 C 1.53102 * 108.83986 * 306.73548 * 8 7 6 10 10 C 1.52573 * 109.95669 * 63.02574 * 9 8 7 11 11 H 1.09000 * 109.23008 * 49.64864 * 10 9 8 12 12 C 1.50704 * 109.19071 * 169.02518 * 10 9 8 13 13 H 1.08010 * 119.99808 * 121.21656 * 12 10 9 14 14 C 1.37875 * 120.00236 * 301.21677 * 12 10 9 15 15 N 1.31514 * 120.00101 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99623 * 359.97438 * 14 12 10 17 17 H 1.48503 * 109.46908 * 90.00615 * 16 14 12 18 18 H 1.48506 * 109.47094 * 210.00030 * 16 14 12 19 19 H 1.48493 * 109.47558 * 330.00068 * 16 14 12 20 20 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 22 22 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 25 25 H 1.09004 * 109.57539 * 176.93233 * 6 4 3 26 26 H 1.09007 * 109.57937 * 297.31855 * 6 4 3 27 27 H 1.09003 * 109.57547 * 186.92841 * 8 7 6 28 28 H 1.08999 * 109.57828 * 66.53994 * 8 7 6 29 29 H 1.08996 * 109.38853 * 302.87432 * 9 8 7 30 30 H 1.09002 * 109.30847 * 183.12323 * 9 8 7 31 31 H 0.97000 * 120.00005 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8620 0.6027 0.5162 6 6 3.9380 1.4879 -1.4448 7 16 3.1404 2.8665 -2.3205 8 6 3.5038 4.2756 -1.2316 9 6 3.0456 3.9339 0.1887 10 6 3.8378 2.7426 0.7190 11 1 4.9016 2.9202 0.5618 12 6 3.5731 2.5890 2.1946 13 1 3.1568 1.6680 2.5756 14 6 3.8623 3.6240 3.0583 15 7 3.6319 3.4898 4.3461 16 14 4.5830 5.2165 2.3994 17 1 3.4824 6.1488 2.0459 18 1 5.4433 5.8377 3.4383 19 1 5.3959 4.9291 1.1904 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3635 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 5.0189 1.6286 -1.4498 26 1 3.6878 0.5485 -1.9380 27 1 2.9700 5.1576 -1.5853 28 1 4.5762 4.4706 -1.2324 29 1 1.9842 3.6863 0.1768 30 1 3.2092 4.7947 0.8371 31 1 3.8357 4.2178 4.9538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259630602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -51.834629 kcal Electronic energy + Delta-G solvation = -13485.538538 eV Core-core repulsion = 11279.148868 eV Total energy + Delta-G solvation = -2206.389670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.22927 -35.14322 -32.16845 -31.08844 -29.48978 -27.92938 -23.34433 -22.39122 -22.15571 -19.54131 -16.86496 -16.65912 -15.51935 -15.17802 -14.68943 -14.08461 -13.43626 -13.21403 -12.91247 -12.65292 -12.55629 -12.16346 -12.00637 -11.65429 -11.23713 -10.94792 -10.79959 -10.31461 -10.17389 -9.94860 -9.57549 -9.26572 -9.05586 -8.67536 -8.56001 -7.11253 -6.10380 -4.09253 2.30469 3.01231 3.22931 3.32033 3.36187 4.35131 4.37931 5.18504 5.34115 5.36045 5.49075 5.58289 5.62157 5.67158 5.77885 5.84447 6.00419 6.02101 6.11327 6.20735 6.33855 6.48000 6.69656 6.70739 6.94874 7.39701 7.67009 7.99104 8.46518 8.92963 9.50239 11.02677 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.013874 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.536327 B = 2017.714965 C = 2718.813115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.108 3.892 5 H 0.065 0.935 6 C -0.104 4.104 7 S -0.271 6.271 8 C -0.080 4.080 9 C -0.119 4.119 10 C 0.013 3.987 11 H 0.035 0.965 12 C -0.503 4.503 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.885 3.115 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.266 1.266 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -3.249 -10.249 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.049 3.951 5 H 0.083 0.917 6 C -0.253 4.253 7 S -0.045 6.045 8 C -0.228 4.228 9 C -0.157 4.157 10 C -0.006 4.006 11 H 0.053 0.947 12 C -0.541 4.541 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.225 1.225 19 H -0.191 1.191 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.669 -3.018 -11.044 11.570 hybrid contribution 1.224 0.702 0.879 1.662 sum -0.445 -2.316 -10.165 10.435 Atomic orbital electron populations 1.21677 0.94466 1.01204 1.03053 1.22374 0.95239 0.85661 0.98850 1.88086 1.20251 1.24001 1.94384 1.22023 0.81712 1.00575 0.90834 0.91680 1.24143 1.02273 0.98484 1.00401 1.86195 1.77068 1.05757 1.35491 1.23568 1.03496 0.96782 0.98979 1.22103 1.02989 0.99486 0.91125 1.19224 0.95076 0.89553 0.96709 0.94748 1.20867 1.42414 1.02559 0.88265 0.90680 1.25005 0.95068 0.98405 0.94765 1.69885 1.48365 1.32937 1.02494 0.86885 0.79018 0.84233 0.78251 1.20434 1.22528 1.19149 0.91748 0.92183 0.92086 0.94823 0.93837 0.89676 0.88986 0.89039 0.90826 0.89719 0.92526 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 37.16 0.38 -1.71 16 2 C 0.06 0.92 6.46 37.16 0.24 1.16 16 3 O -0.35 -7.03 8.12 -35.23 -0.29 -7.32 16 4 C 0.11 2.14 2.17 -26.90 -0.06 2.09 16 5 H 0.07 1.27 7.73 -51.93 -0.40 0.87 16 6 C -0.10 -1.76 6.16 37.21 0.23 -1.53 16 7 S -0.27 -4.81 21.86 -107.50 -2.35 -7.16 16 8 C -0.08 -1.48 6.46 37.21 0.24 -1.24 16 9 C -0.12 -2.60 4.35 -26.90 -0.12 -2.71 16 10 C 0.01 0.30 1.30 -92.20 -0.12 0.18 16 11 H 0.03 0.80 7.17 -51.93 -0.37 0.43 16 12 C -0.50 -13.85 8.98 -34.44 -0.31 -14.16 16 13 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 14 C 0.07 1.96 5.44 -17.82 -0.10 1.86 16 15 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 16 Si 0.89 21.60 24.38 -169.99 -4.14 17.45 16 17 H -0.28 -6.62 6.79 56.52 0.38 -6.23 16 18 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.27 -6.13 6.52 56.52 0.37 -5.77 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.03 0.49 7.89 -51.93 -0.41 0.08 16 24 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.09 1.37 7.89 -51.92 -0.41 0.96 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.94 7.16 -51.93 -0.37 1.57 16 30 H 0.06 1.31 3.04 -51.93 -0.16 1.15 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 254.45 15.07 3.83 3.83 Total: -1.00 -29.58 254.45 -6.47 -36.05 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.68 Total: -0.35 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 0.39 Total: -16.06 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.29 Total: -7.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.45 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -2.35 Total: -7.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.58 -6.47 -36.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.788 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds