Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.38672 * 329.80343 * 4 3 2 6 6 C 1.53093 * 109.39012 * 89.50291 * 4 3 2 7 7 S 1.81752 * 108.84344 * 57.12235 * 6 4 3 8 8 C 1.81750 * 102.21717 * 53.26724 * 7 6 4 9 9 C 1.53102 * 108.83986 * 306.73548 * 8 7 6 10 10 C 1.52573 * 109.95669 * 63.02574 * 9 8 7 11 11 H 1.09000 * 109.23008 * 49.64864 * 10 9 8 12 12 C 1.50704 * 109.19071 * 169.02518 * 10 9 8 13 13 H 1.08010 * 119.99808 * 121.21656 * 12 10 9 14 14 C 1.37875 * 120.00236 * 301.21677 * 12 10 9 15 15 N 1.31514 * 120.00101 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99623 * 359.97438 * 14 12 10 17 17 H 1.48503 * 109.46908 * 90.00615 * 16 14 12 18 18 H 1.48506 * 109.47094 * 210.00030 * 16 14 12 19 19 H 1.48493 * 109.47558 * 330.00068 * 16 14 12 20 20 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 22 22 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 25 25 H 1.09004 * 109.57539 * 176.93233 * 6 4 3 26 26 H 1.09007 * 109.57937 * 297.31855 * 6 4 3 27 27 H 1.09003 * 109.57547 * 186.92841 * 8 7 6 28 28 H 1.08999 * 109.57828 * 66.53994 * 8 7 6 29 29 H 1.08996 * 109.38853 * 302.87432 * 9 8 7 30 30 H 1.09002 * 109.30847 * 183.12323 * 9 8 7 31 31 H 0.97000 * 120.00005 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8620 0.6027 0.5162 6 6 3.9380 1.4879 -1.4448 7 16 3.1404 2.8665 -2.3205 8 6 3.5038 4.2756 -1.2316 9 6 3.0456 3.9339 0.1887 10 6 3.8378 2.7426 0.7190 11 1 4.9016 2.9202 0.5618 12 6 3.5731 2.5890 2.1946 13 1 3.1568 1.6680 2.5756 14 6 3.8623 3.6240 3.0583 15 7 3.6319 3.4898 4.3461 16 14 4.5830 5.2165 2.3994 17 1 3.4824 6.1488 2.0459 18 1 5.4433 5.8377 3.4383 19 1 5.3959 4.9291 1.1904 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3635 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 5.0189 1.6286 -1.4498 26 1 3.6878 0.5485 -1.9380 27 1 2.9700 5.1576 -1.5853 28 1 4.5762 4.4706 -1.2324 29 1 1.9842 3.6863 0.1768 30 1 3.2092 4.7947 0.8371 31 1 3.8357 4.2178 4.9538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259630602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -70.678326 kcal Electronic energy + Delta-G solvation = -13486.355662 eV Core-core repulsion = 11279.148868 eV Total energy + Delta-G solvation = -2207.206794 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.79040 -36.79709 -34.23173 -32.48675 -30.86896 -29.73241 -25.16682 -23.96425 -23.50886 -21.24112 -18.88930 -18.19617 -17.19782 -16.63488 -16.24852 -15.66787 -15.12312 -14.81243 -14.42741 -14.31683 -14.06799 -13.84836 -13.36652 -13.02665 -12.76640 -12.59287 -12.19790 -12.10994 -11.84541 -11.80530 -11.35237 -11.04236 -10.69480 -10.66387 -10.16566 -8.48863 -8.29514 -6.33036 0.92832 1.29645 1.34034 1.44077 1.63356 2.30948 2.92875 3.09960 3.89753 3.95718 4.05969 4.11565 4.23469 4.35033 4.40370 4.52791 4.54641 4.61117 4.72420 4.83348 4.97122 4.99882 5.09968 5.21962 5.32391 5.58065 5.67774 6.25809 6.54696 6.71567 7.30242 8.87092 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.013874 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.536327 B = 2017.714965 C = 2718.813115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.374 6.374 4 C 0.108 3.892 5 H 0.059 0.941 6 C -0.098 4.098 7 S -0.264 6.264 8 C -0.079 4.079 9 C -0.114 4.114 10 C 0.011 3.989 11 H 0.040 0.960 12 C -0.504 4.504 13 H 0.031 0.969 14 C 0.009 3.991 15 N -0.950 5.950 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.301 1.301 19 H -0.239 1.239 20 H 0.044 0.956 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -2.888 -12.869 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 O -0.293 6.293 4 C 0.048 3.952 5 H 0.077 0.923 6 C -0.246 4.246 7 S -0.038 6.038 8 C -0.227 4.227 9 C -0.153 4.153 10 C -0.008 4.008 11 H 0.057 0.943 12 C -0.542 4.542 13 H 0.049 0.951 14 C -0.187 4.187 15 N -0.591 5.591 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.229 1.229 19 H -0.162 1.162 20 H 0.063 0.937 21 H 0.082 0.918 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.119 0.881 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.121 -2.675 -13.696 13.999 hybrid contribution 0.977 0.451 1.743 2.049 sum -0.143 -2.224 -11.952 12.158 Atomic orbital electron populations 1.21684 0.92960 1.03018 1.02228 1.22610 0.96516 0.84166 0.99530 1.88043 1.20295 1.26353 1.94646 1.21885 0.82007 0.98602 0.92678 0.92312 1.24113 1.03010 0.99496 0.97969 1.86214 1.77439 1.05541 1.34647 1.23529 1.04478 0.98117 0.96592 1.21921 1.01782 0.98182 0.93396 1.19201 0.95526 0.92114 0.93968 0.94259 1.21130 1.41104 1.00752 0.91239 0.95095 1.25888 0.95715 1.02325 0.94802 1.70047 1.50543 1.34309 1.04158 0.85864 0.78668 0.79618 0.78396 1.19451 1.22916 1.16242 0.93720 0.91778 0.88983 0.92270 0.94905 0.88076 0.86557 0.86933 0.89582 0.91459 0.93806 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 10.28 71.98 0.74 -3.12 16 2 C 0.05 1.53 6.46 71.98 0.46 2.00 16 3 O -0.37 -14.84 8.12 -148.98 -1.21 -16.05 16 4 C 0.11 4.15 2.17 30.49 0.07 4.22 16 5 H 0.06 2.29 7.73 -2.39 -0.02 2.27 16 6 C -0.10 -2.97 6.16 72.01 0.44 -2.53 16 7 S -0.26 -8.48 21.86 -56.49 -1.23 -9.72 16 8 C -0.08 -2.65 6.46 72.02 0.46 -2.19 16 9 C -0.11 -4.80 4.35 30.49 0.13 -4.67 16 10 C 0.01 0.49 1.30 -11.82 -0.02 0.47 16 11 H 0.04 1.74 7.17 -2.39 -0.02 1.72 16 12 C -0.50 -28.46 8.98 25.60 0.23 -28.23 16 13 H 0.03 1.96 7.98 -2.91 -0.02 1.93 16 14 C 0.01 0.54 5.44 84.65 0.46 1.00 16 15 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 16 Si 0.95 44.26 24.38 68.60 1.67 45.93 16 17 H -0.27 -12.05 6.79 99.48 0.68 -11.37 16 18 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.24 -10.00 6.52 99.48 0.65 -9.35 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 22 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.06 1.57 7.89 -2.39 -0.02 1.55 16 24 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 25 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.12 3.00 7.89 -2.38 -0.02 2.99 16 27 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.07 3.04 7.16 -2.39 -0.02 3.02 16 30 H 0.04 1.95 3.04 -2.39 -0.01 1.94 16 31 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -64.88 254.45 3.52 -61.36 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.00 Total: 10.79 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 2.99 Total: -33.05 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.30 Total: -59.25 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.21 Total: -16.05 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.93 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.23 Total: -9.72 kcal Total: -64.88 3.52 -61.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.322 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds