Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46787 * 2 1 4 4 C 1.42900 * 113.99407 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.31239 * 30.24491 * 4 3 2 6 6 C 1.53098 * 109.38766 * 270.48685 * 4 3 2 7 7 S 1.81743 * 108.84546 * 302.88383 * 6 4 3 8 8 C 1.81748 * 102.21735 * 306.73203 * 7 6 4 9 9 C 1.53093 * 108.84368 * 53.26654 * 8 7 6 10 10 C 1.52576 * 109.95361 * 296.97494 * 9 8 7 11 11 H 1.08995 * 109.22975 * 310.39283 * 10 9 8 12 12 C 1.50705 * 109.22837 * 190.99467 * 10 9 8 13 13 H 1.07991 * 120.00327 * 245.65113 * 12 10 9 14 14 C 1.37882 * 119.99640 * 65.64178 * 12 10 9 15 15 N 1.31517 * 120.00108 * 195.33219 * 14 12 10 16 16 Si 1.86801 * 120.00111 * 15.33424 * 14 12 10 17 17 H 1.48501 * 109.47309 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47025 * 299.99927 * 16 14 12 19 19 H 1.48501 * 109.46920 * 59.99719 * 16 14 12 20 20 H 1.09008 * 109.47076 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47418 * 300.00038 * 1 2 3 22 22 H 1.08996 * 109.47465 * 59.99879 * 1 2 3 23 23 H 1.09001 * 109.46800 * 240.00396 * 2 1 3 24 24 H 1.08992 * 109.47059 * 119.99834 * 2 1 3 25 25 H 1.09000 * 109.57804 * 183.06968 * 6 4 3 26 26 H 1.09001 * 109.67877 * 62.75233 * 6 4 3 27 27 H 1.09000 * 109.57911 * 293.45448 * 8 7 6 28 28 H 1.09004 * 109.68164 * 173.13813 * 8 7 6 29 29 H 1.08997 * 109.39203 * 176.82560 * 9 8 7 30 30 H 1.09000 * 109.39189 * 57.12400 * 9 8 7 31 31 H 0.97000 * 119.99305 * 354.65569 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8600 0.6028 -0.5190 6 6 3.9390 1.4878 1.4433 7 16 3.1421 2.8660 2.3199 8 6 3.5046 4.2753 1.2310 9 6 3.0453 3.9340 -0.1890 10 6 3.8371 2.7428 -0.7202 11 1 4.9010 2.9202 -0.5631 12 6 3.5723 2.5891 -2.1958 13 1 3.0552 1.7152 -2.5634 14 6 3.9901 3.5643 -3.0764 15 7 3.5109 3.5938 -4.3008 16 14 5.2368 4.8438 -2.5304 17 1 5.5180 5.7723 -3.6547 18 1 4.6901 5.6087 -1.3810 19 1 6.4939 4.1671 -2.1216 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 5.0199 1.6284 1.4475 26 1 3.6911 0.5485 1.9377 27 1 4.5770 4.4705 1.2309 28 1 2.9727 5.1587 1.5844 29 1 3.2069 4.7945 -0.8383 30 1 1.9839 3.6864 -0.1763 31 1 2.9238 2.8857 -4.6089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259630606.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -60.575579 kcal Electronic energy + Delta-G solvation = -13464.992682 eV Core-core repulsion = 11258.223976 eV Total energy + Delta-G solvation = -2206.768706 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.20889 -35.06950 -32.22642 -31.05680 -29.49150 -27.68246 -23.05423 -22.24484 -22.11348 -19.36937 -17.55940 -16.67208 -15.40432 -15.15963 -14.45564 -13.91685 -13.61360 -13.21630 -12.95398 -12.62365 -12.43235 -12.02357 -12.00748 -11.35449 -11.17289 -10.86603 -10.71152 -10.66830 -10.09772 -9.85610 -9.53243 -9.27632 -8.81998 -8.75028 -8.25752 -7.10509 -6.45069 -4.06980 2.33099 3.04868 3.34439 3.38213 3.56386 4.35506 4.45983 5.22565 5.33521 5.36472 5.46463 5.58622 5.62591 5.73550 5.74636 5.82944 6.01173 6.07200 6.12265 6.25976 6.31177 6.44524 6.71580 6.82360 7.09665 7.46832 7.94095 8.09461 8.37474 8.89301 9.60761 10.94148 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.013617 C = 0.010144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.618176 B = 2055.704364 C = 2759.506487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.108 3.892 5 H 0.061 0.939 6 C -0.104 4.104 7 S -0.275 6.275 8 C -0.078 4.078 9 C -0.119 4.119 10 C 0.020 3.980 11 H 0.027 0.973 12 C -0.586 4.586 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.908 5.908 16 Si 1.043 2.957 17 H -0.286 1.286 18 H -0.272 1.272 19 H -0.284 1.284 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -3.603 10.222 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.048 3.952 5 H 0.079 0.921 6 C -0.253 4.253 7 S -0.050 6.050 8 C -0.226 4.226 9 C -0.158 4.158 10 C 0.001 3.999 11 H 0.045 0.955 12 C -0.624 4.624 13 H 0.075 0.925 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.872 3.128 17 H -0.211 1.211 18 H -0.199 1.199 19 H -0.211 1.211 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.309 -2.082 10.688 10.893 hybrid contribution 0.060 -1.736 -0.595 1.836 sum -0.249 -3.818 10.093 10.793 Atomic orbital electron populations 1.21676 0.94452 1.01194 1.03033 1.22365 0.95239 0.85792 0.98746 1.88091 1.20413 1.23812 1.94382 1.22078 0.81549 1.00774 0.90811 0.92098 1.24135 1.02230 0.98498 1.00433 1.86181 1.77205 1.05965 1.35612 1.23585 1.03360 0.96435 0.99214 1.22177 1.02384 1.00158 0.91078 1.19058 0.94415 0.89511 0.96931 0.95477 1.21853 1.41196 1.09546 0.89774 0.92540 1.25749 0.97954 0.99389 0.94530 1.70843 1.31481 1.32562 1.19338 0.84071 0.76331 0.76497 0.75913 1.21146 1.19862 1.21087 0.92070 0.92101 0.91877 0.94105 0.94788 0.89750 0.89174 0.90985 0.89093 0.91110 0.90482 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 37.16 0.38 -1.74 16 2 C 0.06 0.94 6.46 37.16 0.24 1.18 16 3 O -0.35 -7.18 8.12 -35.23 -0.29 -7.47 16 4 C 0.11 2.18 2.18 -26.89 -0.06 2.12 16 5 H 0.06 1.23 7.72 -51.93 -0.40 0.83 16 6 C -0.10 -1.80 6.16 37.21 0.23 -1.57 16 7 S -0.28 -4.96 21.86 -107.50 -2.35 -7.31 16 8 C -0.08 -1.43 6.45 37.21 0.24 -1.19 16 9 C -0.12 -2.61 4.53 -26.90 -0.12 -2.73 16 10 C 0.02 0.46 1.29 -92.20 -0.12 0.34 16 11 H 0.03 0.63 6.72 -51.93 -0.35 0.28 16 12 C -0.59 -16.12 8.66 -34.44 -0.30 -16.41 16 13 H 0.06 1.70 7.99 -52.49 -0.42 1.28 16 14 C 0.03 0.81 5.28 -17.82 -0.09 0.71 16 15 N -0.91 -27.68 13.70 55.43 0.76 -26.92 16 16 Si 1.04 24.67 26.17 -169.99 -4.45 20.22 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -5.88 5.76 56.52 0.33 -5.56 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 24 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 25 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.07 1.63 4.76 -51.93 -0.25 1.38 16 30 H 0.08 1.80 7.16 -51.93 -0.37 1.43 16 31 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -29.57 256.90 -6.85 -36.41 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.79 Total: 0.49 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 0.40 Total: -19.30 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.76 Total: -26.92 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.29 Total: -7.47 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.45 Total: 20.22 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.35 Total: -7.31 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.57 -6.85 -36.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630606.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.164 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds