Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46787 * 2 1 4 4 C 1.42900 * 113.99407 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.31239 * 30.24491 * 4 3 2 6 6 C 1.53098 * 109.38766 * 270.48685 * 4 3 2 7 7 S 1.81743 * 108.84546 * 302.88383 * 6 4 3 8 8 C 1.81748 * 102.21735 * 306.73203 * 7 6 4 9 9 C 1.53093 * 108.84368 * 53.26654 * 8 7 6 10 10 C 1.52576 * 109.95361 * 296.97494 * 9 8 7 11 11 H 1.08995 * 109.22975 * 310.39283 * 10 9 8 12 12 C 1.50705 * 109.22837 * 190.99467 * 10 9 8 13 13 H 1.07991 * 120.00327 * 245.65113 * 12 10 9 14 14 C 1.37882 * 119.99640 * 65.64178 * 12 10 9 15 15 N 1.31517 * 120.00108 * 195.33219 * 14 12 10 16 16 Si 1.86801 * 120.00111 * 15.33424 * 14 12 10 17 17 H 1.48501 * 109.47309 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47025 * 299.99927 * 16 14 12 19 19 H 1.48501 * 109.46920 * 59.99719 * 16 14 12 20 20 H 1.09008 * 109.47076 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47418 * 300.00038 * 1 2 3 22 22 H 1.08996 * 109.47465 * 59.99879 * 1 2 3 23 23 H 1.09001 * 109.46800 * 240.00396 * 2 1 3 24 24 H 1.08992 * 109.47059 * 119.99834 * 2 1 3 25 25 H 1.09000 * 109.57804 * 183.06968 * 6 4 3 26 26 H 1.09001 * 109.67877 * 62.75233 * 6 4 3 27 27 H 1.09000 * 109.57911 * 293.45448 * 8 7 6 28 28 H 1.09004 * 109.68164 * 173.13813 * 8 7 6 29 29 H 1.08997 * 109.39203 * 176.82560 * 9 8 7 30 30 H 1.09000 * 109.39189 * 57.12400 * 9 8 7 31 31 H 0.97000 * 119.99305 * 354.65569 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8600 0.6028 -0.5190 6 6 3.9390 1.4878 1.4433 7 16 3.1421 2.8660 2.3199 8 6 3.5046 4.2753 1.2310 9 6 3.0453 3.9340 -0.1890 10 6 3.8371 2.7428 -0.7202 11 1 4.9010 2.9202 -0.5631 12 6 3.5723 2.5891 -2.1958 13 1 3.0552 1.7152 -2.5634 14 6 3.9901 3.5643 -3.0764 15 7 3.5109 3.5938 -4.3008 16 14 5.2368 4.8438 -2.5304 17 1 5.5180 5.7723 -3.6547 18 1 4.6901 5.6087 -1.3810 19 1 6.4939 4.1671 -2.1216 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 5.0199 1.6284 1.4475 26 1 3.6911 0.5485 1.9377 27 1 4.5770 4.4705 1.2309 28 1 2.9727 5.1587 1.5844 29 1 3.2069 4.7945 -0.8383 30 1 1.9839 3.6864 -0.1763 31 1 2.9238 2.8857 -4.6089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259630606.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -79.148486 kcal Electronic energy + Delta-G solvation = -13465.798063 eV Core-core repulsion = 11258.223976 eV Total energy + Delta-G solvation = -2207.574088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.79497 -36.75907 -34.29267 -32.47653 -30.90162 -29.48019 -24.84729 -23.84868 -23.53698 -21.11349 -19.67774 -18.16053 -16.95673 -16.63246 -16.00355 -15.55118 -15.37095 -14.82194 -14.41944 -14.21178 -14.01772 -13.59433 -13.37084 -12.88072 -12.75513 -12.53542 -12.34911 -12.18478 -11.83749 -11.62651 -11.32281 -10.83479 -10.70150 -10.47865 -10.21179 -8.74241 -8.47009 -6.34344 0.94101 1.45264 1.52492 1.64306 1.71013 2.50021 2.90585 3.11063 3.88104 3.95491 4.11778 4.15975 4.17252 4.29879 4.45807 4.47972 4.52066 4.59239 4.75473 4.79639 4.97216 5.02956 5.07108 5.25296 5.31320 5.67559 6.00480 6.06290 6.49843 6.57648 7.43024 8.66165 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.013617 C = 0.010144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.618176 B = 2055.704364 C = 2759.506487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.375 6.375 4 C 0.106 3.894 5 H 0.053 0.947 6 C -0.097 4.097 7 S -0.271 6.271 8 C -0.076 4.076 9 C -0.112 4.112 10 C 0.016 3.984 11 H 0.039 0.961 12 C -0.584 4.584 13 H 0.012 0.988 14 C -0.025 4.025 15 N -0.944 5.944 16 Si 1.080 2.920 17 H -0.294 1.294 18 H -0.236 1.236 19 H -0.260 1.260 20 H 0.093 0.907 21 H 0.064 0.936 22 H 0.042 0.958 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -3.336 12.933 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 O -0.294 6.294 4 C 0.046 3.954 5 H 0.070 0.930 6 C -0.246 4.246 7 S -0.045 6.045 8 C -0.224 4.224 9 C -0.151 4.151 10 C -0.004 4.004 11 H 0.057 0.943 12 C -0.622 4.622 13 H 0.031 0.969 14 C -0.221 4.221 15 N -0.580 5.580 16 Si 0.900 3.100 17 H -0.220 1.220 18 H -0.161 1.161 19 H -0.185 1.185 20 H 0.111 0.889 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.654 -1.845 13.430 13.572 hybrid contribution -0.334 -1.947 -1.477 2.467 sum 0.319 -3.792 11.953 12.545 Atomic orbital electron populations 1.21682 0.92865 1.03071 1.02192 1.22602 0.96587 0.84272 0.99372 1.88049 1.20528 1.26198 1.94651 1.21951 0.81807 0.98853 0.92761 0.92951 1.24093 1.03055 0.99495 0.97913 1.86214 1.77639 1.05853 1.34822 1.23545 1.04662 0.97583 0.96602 1.21951 1.00844 0.98856 0.93498 1.19059 0.95268 0.91887 0.94141 0.94331 1.22049 1.39564 1.07681 0.92884 0.96940 1.27254 0.99118 1.01879 0.93888 1.70988 1.33153 1.32839 1.21050 0.83665 0.74988 0.74659 0.76644 1.22049 1.16051 1.18522 0.88862 0.91719 0.93856 0.95216 0.92283 0.87979 0.86897 0.89216 0.87034 0.92404 0.92743 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 10.28 71.98 0.74 -3.19 16 2 C 0.05 1.58 6.46 71.98 0.46 2.04 16 3 O -0.38 -15.27 8.12 -148.98 -1.21 -16.48 16 4 C 0.11 4.16 2.18 30.49 0.07 4.23 16 5 H 0.05 2.11 7.72 -2.39 -0.02 2.09 16 6 C -0.10 -3.02 6.16 72.01 0.44 -2.58 16 7 S -0.27 -8.82 21.86 -56.49 -1.23 -10.05 16 8 C -0.08 -2.53 6.45 72.01 0.46 -2.06 16 9 C -0.11 -4.75 4.53 30.48 0.14 -4.61 16 10 C 0.02 0.70 1.29 -11.82 -0.02 0.69 16 11 H 0.04 1.67 6.72 -2.39 -0.02 1.66 16 12 C -0.58 -32.91 8.66 25.60 0.22 -32.69 16 13 H 0.01 0.78 7.99 -2.91 -0.02 0.75 16 14 C -0.02 -1.41 5.28 84.66 0.45 -0.97 16 15 N -0.94 -59.69 13.70 21.45 0.29 -59.40 16 16 Si 1.08 48.57 26.17 68.60 1.80 50.36 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.24 -9.24 5.76 99.48 0.57 -8.67 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 24 H 0.06 1.62 7.90 -2.39 -0.02 1.60 16 25 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.11 3.02 7.90 -2.39 -0.02 3.00 16 27 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.06 2.56 4.76 -2.39 -0.01 2.55 16 30 H 0.05 2.52 7.16 -2.39 -0.02 2.50 16 31 H 0.25 16.10 8.73 -92.71 -0.81 15.30 16 Total: -1.00 -65.55 256.90 3.53 -62.02 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.92 Total: 12.69 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 2.97 Total: -39.14 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.29 Total: -59.40 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.21 Total: -16.48 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.80 Total: 50.36 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.23 Total: -10.05 kcal Total: -65.55 3.53 -62.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630606.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.133 kcal (2) G-P(sol) polarization free energy of solvation -65.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds