Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47047 * 2 1 4 4 C 1.42900 * 113.99652 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.31107 * 330.24707 * 4 3 2 6 6 C 1.53093 * 109.39330 * 89.99963 * 4 3 2 7 7 S 1.81743 * 108.95147 * 183.10897 * 6 4 3 8 8 C 1.81799 * 102.20271 * 306.90366 * 7 6 4 9 9 C 1.53099 * 108.93473 * 53.09237 * 8 7 6 10 10 C 1.52580 * 109.39065 * 210.49314 * 4 3 2 11 11 H 1.09000 * 109.22598 * 289.49803 * 10 4 3 12 12 C 1.50701 * 109.22721 * 48.85697 * 10 4 3 13 13 H 1.08005 * 120.00085 * 5.49957 * 12 10 4 14 14 C 1.37873 * 120.00193 * 185.50910 * 12 10 4 15 15 N 1.31515 * 120.00227 * 9.52681 * 14 12 10 16 16 Si 1.86808 * 119.99915 * 189.52745 * 14 12 10 17 17 H 1.48507 * 109.46821 * 94.99307 * 16 14 12 18 18 H 1.48500 * 109.46875 * 214.98898 * 16 14 12 19 19 H 1.48495 * 109.47096 * 334.99135 * 16 14 12 20 20 H 1.09003 * 109.46863 * 300.00262 * 1 2 3 21 21 H 1.08998 * 109.47345 * 59.99681 * 1 2 3 22 22 H 1.09003 * 109.47470 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46863 * 239.99738 * 2 1 3 24 24 H 1.09002 * 109.46858 * 120.00217 * 2 1 3 25 25 H 1.09006 * 109.57456 * 302.98124 * 6 4 3 26 26 H 1.09005 * 109.57656 * 63.23593 * 6 4 3 27 27 H 1.08999 * 109.46481 * 293.28954 * 8 7 6 28 28 H 1.08996 * 109.69454 * 173.02493 * 8 7 6 29 29 H 1.09007 * 109.38463 * 176.90517 * 9 8 7 30 30 H 1.09002 * 109.39451 * 57.19844 * 9 8 7 31 31 H 0.97003 * 120.00096 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8609 0.5981 0.5096 6 6 3.9370 1.5003 -1.4449 7 16 5.7537 1.5506 -1.4324 8 6 6.0916 2.9618 -0.3372 9 6 5.3429 2.7569 0.9824 10 6 3.8383 2.7362 0.7298 11 1 3.5642 3.5997 0.1237 12 6 3.1127 2.8064 2.0487 13 1 2.5004 1.9778 2.3730 14 6 3.2303 3.9283 2.8414 15 7 3.8170 5.0073 2.3711 16 14 2.5562 3.9158 4.5836 17 1 3.6435 3.5653 5.5325 18 1 2.0225 5.2608 4.9174 19 1 1.4671 2.9116 4.6858 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.5999 0.6095 -1.9750 26 1 3.5505 2.3897 -1.9427 27 1 5.7489 3.8808 -0.8127 28 1 7.1621 3.0281 -0.1432 29 1 5.5840 3.5715 1.6654 30 1 5.6481 1.8102 1.4284 31 1 3.9000 5.7965 2.9289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259630613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = -81.152787 kcal Electronic energy + Delta-G solvation = -13281.806412 eV Core-core repulsion = 11074.145412 eV Total energy + Delta-G solvation = -2207.661001 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.63418 -36.80450 -34.05030 -32.44483 -30.67695 -29.30566 -25.43877 -23.96755 -23.14510 -21.33202 -18.51752 -18.23419 -16.84889 -16.62105 -16.31145 -15.62640 -15.20199 -14.60329 -14.42221 -14.10077 -13.81626 -13.66336 -13.21030 -12.87135 -12.79474 -12.50155 -12.31541 -12.23467 -11.95330 -11.65023 -11.37070 -11.05145 -10.86297 -10.42599 -10.14626 -8.66445 -8.11563 -6.17902 0.86674 1.39795 1.41621 1.51347 1.52227 2.43986 3.00486 3.22350 3.90586 3.94925 4.16920 4.22034 4.27775 4.36216 4.44746 4.54016 4.59350 4.77904 4.85116 4.94058 5.09036 5.10627 5.21400 5.31135 5.58367 5.78445 5.87383 6.31223 6.58587 6.89327 7.46627 8.96169 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.013626 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.782841 B = 2054.427935 C = 3158.220032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.388 6.388 4 C 0.110 3.890 5 H 0.057 0.943 6 C -0.093 4.093 7 S -0.270 6.270 8 C -0.069 4.069 9 C -0.095 4.095 10 C 0.040 3.960 11 H 0.001 0.999 12 C -0.509 4.509 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.947 3.053 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.272 1.272 20 H 0.046 0.954 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -8.267 -5.037 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.308 6.308 4 C 0.051 3.949 5 H 0.075 0.925 6 C -0.241 4.241 7 S -0.044 6.044 8 C -0.217 4.217 9 C -0.134 4.134 10 C 0.021 3.979 11 H 0.019 0.981 12 C -0.547 4.547 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.558 5.558 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.197 1.197 20 H 0.066 0.934 21 H 0.080 0.920 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.133 0.867 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.372 -8.595 -5.536 10.230 hybrid contribution -1.024 1.052 1.559 2.141 sum -0.653 -7.543 -3.977 8.552 Atomic orbital electron populations 1.21723 0.92828 1.03216 1.02310 1.22687 0.96553 0.83863 1.00026 1.88026 1.21125 1.26964 1.94698 1.22257 0.80919 0.99353 0.92409 0.92509 1.23927 0.93208 1.06058 1.00935 1.86169 1.07935 1.45474 1.64862 1.23505 1.04149 0.96689 0.97317 1.21577 0.95566 1.01150 0.95123 1.18688 0.92581 0.91600 0.94999 0.98109 1.21219 1.28198 1.01746 1.03542 0.93240 1.25630 0.96054 0.94973 1.01724 1.70069 1.45757 1.02838 1.37121 0.85713 0.78695 0.77190 0.81115 1.19905 1.21220 1.19683 0.93439 0.92037 0.88616 0.92340 0.94081 0.86662 0.90476 0.91080 0.86877 0.91721 0.92886 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 10.28 71.98 0.74 -3.07 16 2 C 0.05 1.43 6.46 71.98 0.47 1.89 16 3 O -0.39 -16.34 9.04 -148.98 -1.35 -17.69 16 4 C 0.11 4.57 1.98 30.49 0.06 4.63 16 5 H 0.06 2.32 7.69 -2.39 -0.02 2.30 16 6 C -0.09 -3.28 6.06 72.01 0.44 -2.84 16 7 S -0.27 -9.27 22.34 -56.49 -1.26 -10.53 16 8 C -0.07 -2.56 6.45 72.02 0.46 -2.10 16 9 C -0.09 -4.25 4.96 30.49 0.15 -4.10 16 10 C 0.04 1.98 1.55 -11.82 -0.02 1.96 16 11 H 0.00 0.04 8.03 -2.39 -0.02 0.02 16 12 C -0.51 -28.07 7.95 25.60 0.20 -27.87 16 13 H 0.05 2.76 7.45 -2.91 -0.02 2.74 16 14 C 0.01 0.81 5.08 84.65 0.43 1.24 16 15 N -0.92 -52.84 12.09 21.45 0.26 -52.58 16 16 Si 0.95 43.92 29.55 68.60 2.03 45.95 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.06 1.56 7.82 -2.39 -0.02 1.54 16 24 H 0.04 1.30 8.08 -2.39 -0.02 1.28 16 25 H 0.12 3.45 7.82 -2.38 -0.02 3.43 16 26 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 29 H 0.06 3.27 6.57 -2.38 -0.02 3.25 16 30 H 0.05 2.29 8.06 -2.39 -0.02 2.27 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -60.11 263.79 3.69 -56.42 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.08 Total: 8.68 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 2.93 Total: -30.26 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.26 Total: -52.58 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.35 Total: -17.69 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.26 Total: -10.53 kcal Total: -60.11 3.69 -56.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.734 kcal (2) G-P(sol) polarization free energy of solvation -60.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds