Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48494 * 109.47233 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47373 * 119.99753 * 3 2 1 6 6 H 1.48502 * 109.47287 * 239.99642 * 3 2 1 7 7 C 1.40047 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00400 * 157.91520 * 7 2 1 9 9 C 1.40851 * 119.99655 * 337.91920 * 7 2 1 10 10 C 1.41768 * 126.62720 * 340.84756 * 9 7 2 11 11 N 1.30235 * 108.49255 * 179.81186 * 10 9 7 12 12 N 1.39851 * 109.66163 * 0.45308 * 11 10 9 13 13 H 0.97002 * 125.79034 * 179.68751 * 12 11 10 14 14 C 1.36224 * 108.42591 * 359.70877 * 12 11 10 15 15 C 1.47184 * 126.67003 * 180.02562 * 14 12 11 16 16 C 1.40305 * 120.59883 * 334.69817 * 15 14 12 17 17 C 1.38222 * 118.23582 * 179.70853 * 16 15 14 18 18 N 1.32511 * 119.22877 * 0.56544 * 17 16 15 19 19 C 1.31894 * 121.16092 * 359.71913 * 18 17 16 20 20 N 1.31562 * 121.94824 * 359.97068 * 19 18 17 21 21 H 0.97003 * 120.00251 * 173.94166 * 1 2 3 22 22 H 1.07999 * 125.75278 * 359.97438 * 10 9 7 23 23 H 1.08004 * 120.88147 * 359.97438 * 16 15 14 24 24 H 1.08001 * 120.38889 * 180.25582 * 17 16 15 25 25 H 1.07999 * 119.02460 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0958 1.6965 1.2125 6 1 3.0959 1.6964 -1.2125 7 6 2.0084 -1.2128 0.0005 8 1 3.0289 -1.2473 -0.3511 9 6 1.3816 -2.3877 0.4596 10 6 0.2301 -2.4657 1.2829 11 7 -0.0468 -3.7216 1.4879 12 7 0.8934 -4.5237 0.8334 13 1 0.9106 -5.4936 0.8345 14 6 1.7814 -3.7120 0.1943 15 6 2.9343 -4.1363 -0.6163 16 6 3.5413 -5.3822 -0.3976 17 6 4.6170 -5.7339 -1.1912 18 7 5.0430 -4.8862 -2.1164 19 6 4.4555 -3.7188 -2.2948 20 7 3.4250 -3.3401 -1.5700 21 1 -0.4850 -0.8354 -0.0887 22 1 -0.3254 -1.6253 1.6721 23 1 3.1751 -6.0506 0.3676 24 1 5.1077 -6.6863 -1.0556 25 1 4.8310 -3.0547 -3.0592 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662167.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = 106.244766 kcal Electronic energy + Delta-G solvation = -13565.266387 eV Core-core repulsion = 11159.040011 eV Total energy + Delta-G solvation = -2406.226377 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.12521 -39.20830 -34.24543 -33.07260 -31.68437 -29.74391 -28.96768 -25.26472 -23.49886 -23.41090 -20.53959 -19.81729 -18.24106 -16.70863 -16.10588 -15.20117 -14.78683 -14.22511 -14.01910 -13.40144 -13.21391 -13.00287 -12.76803 -12.27565 -11.42305 -11.22147 -10.46889 -10.34432 -10.15104 -10.03842 -9.45903 -9.25639 -9.19301 -8.40765 -8.25089 -7.61135 -7.30822 -4.30573 1.39284 1.75480 3.00965 3.14173 3.19000 3.34221 3.86036 3.89857 3.96697 4.63640 4.79686 5.01842 5.12802 5.24623 5.67400 5.89945 6.10510 6.13192 6.34996 6.73176 7.00289 7.19756 7.34051 7.66490 7.83422 7.95086 8.42868 8.53719 8.61123 8.90018 8.99866 9.90077 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.011529 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.177456 B = 2427.993822 C = 3318.514532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.431 4.431 8 H 0.093 0.907 9 C 0.037 3.963 10 C -0.014 4.014 11 N -0.268 5.268 12 N -0.504 5.504 13 H 0.419 0.581 14 C -0.109 4.109 15 C 0.280 3.720 16 C -0.273 4.273 17 C 0.143 3.857 18 N -0.575 5.575 19 C 0.297 3.703 20 N -0.515 5.515 21 H 0.298 0.702 22 H 0.173 0.827 23 H 0.124 0.876 24 H 0.150 0.850 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -3.270 -0.304 5.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.190 4.190 3 Si 0.894 3.106 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.111 0.889 9 C 0.026 3.974 10 C -0.206 4.206 11 N -0.090 5.090 12 N -0.224 5.224 13 H 0.260 0.740 14 C -0.225 4.225 15 C 0.141 3.859 16 C -0.297 4.297 17 C -0.019 4.019 18 N -0.293 5.293 19 C 0.007 3.993 20 N -0.231 5.231 21 H 0.112 0.888 22 H 0.190 0.810 23 H 0.142 0.858 24 H 0.167 0.833 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.538 -1.799 -0.409 3.990 hybrid contribution 0.394 -2.375 0.220 2.418 sum 3.932 -4.174 -0.189 5.737 Atomic orbital electron populations 1.70498 1.08227 1.34233 1.28657 1.27246 0.95683 1.04637 0.91483 0.83537 0.75561 0.73265 0.78274 1.19743 1.19943 1.19732 1.20266 1.01573 0.91598 1.32878 0.88888 1.18231 0.92495 0.91728 0.94971 1.24006 1.00692 0.93686 1.02256 1.76195 1.12592 1.03939 1.16230 1.45104 1.23285 1.06522 1.47478 0.74022 1.18297 1.00906 0.90315 1.13001 1.18811 0.90328 0.88034 0.88769 1.22537 1.01676 1.00489 1.05011 1.22683 0.92078 0.97546 0.89588 1.68301 1.33280 1.05689 1.22058 1.24727 0.88269 0.90824 0.95460 1.68653 1.12948 1.35253 1.06275 0.88797 0.80964 0.85761 0.83266 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 12.65 55.55 0.70 -18.95 15 2 C 0.03 0.75 5.30 -17.31 -0.09 0.66 15 3 Si 1.07 20.61 29.99 -169.99 -5.10 15.51 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.78 15 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.43 -11.01 8.65 -37.92 -0.33 -11.33 15 8 H 0.09 2.41 6.96 -52.49 -0.37 2.05 15 9 C 0.04 0.94 5.58 -106.57 -0.59 0.34 15 10 C -0.01 -0.33 9.96 -16.88 -0.17 -0.50 15 11 N -0.27 -6.17 12.57 30.93 0.39 -5.78 15 12 N -0.50 -10.87 7.31 33.89 0.25 -10.63 15 13 H 0.42 7.50 8.88 -182.78 -1.62 5.87 15 14 C -0.11 -2.61 7.04 -81.29 -0.57 -3.18 15 15 C 0.28 6.23 6.70 -82.70 -0.55 5.68 15 16 C -0.27 -5.03 9.90 -38.81 -0.38 -5.41 15 17 C 0.14 2.41 11.29 -17.26 -0.19 2.22 15 18 N -0.57 -10.62 10.43 -14.67 -0.15 -10.77 15 19 C 0.30 5.70 12.28 -92.27 -1.13 4.57 15 20 N -0.51 -11.55 8.82 -11.22 -0.10 -11.65 15 21 H 0.30 7.55 6.14 -40.82 -0.25 7.30 15 22 H 0.17 3.99 6.85 -52.49 -0.36 3.64 15 23 H 0.12 1.97 7.98 -52.48 -0.42 1.55 15 24 H 0.15 1.93 8.06 -52.49 -0.42 1.50 15 25 H 0.18 2.86 8.06 -52.49 -0.42 2.44 15 LS Contribution 232.71 15.07 3.51 3.51 Total: -1.00 -28.33 232.71 -7.18 -35.51 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -2.66 Total: 10.22 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -4.02 Total: -6.96 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 1.09 Total: -57.78 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.10 Total: 15.51 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.33 -7.18 -35.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662167.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.754 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds