Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48494 * 109.47233 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47373 * 119.99753 * 3 2 1 6 6 H 1.48502 * 109.47287 * 239.99642 * 3 2 1 7 7 C 1.40047 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00400 * 157.91520 * 7 2 1 9 9 C 1.40851 * 119.99655 * 337.91920 * 7 2 1 10 10 C 1.41768 * 126.62720 * 340.84756 * 9 7 2 11 11 N 1.30235 * 108.49255 * 179.81186 * 10 9 7 12 12 N 1.39851 * 109.66163 * 0.45308 * 11 10 9 13 13 H 0.97002 * 125.79034 * 179.68751 * 12 11 10 14 14 C 1.36224 * 108.42591 * 359.70877 * 12 11 10 15 15 C 1.47184 * 126.67003 * 180.02562 * 14 12 11 16 16 C 1.40305 * 120.59883 * 334.69817 * 15 14 12 17 17 C 1.38222 * 118.23582 * 179.70853 * 16 15 14 18 18 N 1.32511 * 119.22877 * 0.56544 * 17 16 15 19 19 C 1.31894 * 121.16092 * 359.71913 * 18 17 16 20 20 N 1.31562 * 121.94824 * 359.97068 * 19 18 17 21 21 H 0.97003 * 120.00251 * 173.94166 * 1 2 3 22 22 H 1.07999 * 125.75278 * 359.97438 * 10 9 7 23 23 H 1.08004 * 120.88147 * 359.97438 * 16 15 14 24 24 H 1.08001 * 120.38889 * 180.25582 * 17 16 15 25 25 H 1.07999 * 119.02460 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0958 1.6965 1.2125 6 1 3.0959 1.6964 -1.2125 7 6 2.0084 -1.2128 0.0005 8 1 3.0289 -1.2473 -0.3511 9 6 1.3816 -2.3877 0.4596 10 6 0.2301 -2.4657 1.2829 11 7 -0.0468 -3.7216 1.4879 12 7 0.8934 -4.5237 0.8334 13 1 0.9106 -5.4936 0.8345 14 6 1.7814 -3.7120 0.1943 15 6 2.9343 -4.1363 -0.6163 16 6 3.5413 -5.3822 -0.3976 17 6 4.6170 -5.7339 -1.1912 18 7 5.0430 -4.8862 -2.1164 19 6 4.4555 -3.7188 -2.2948 20 7 3.4250 -3.3401 -1.5700 21 1 -0.4850 -0.8354 -0.0887 22 1 -0.3254 -1.6253 1.6721 23 1 3.1751 -6.0506 0.3676 24 1 5.1077 -6.6863 -1.0556 25 1 4.8310 -3.0547 -3.0592 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662167.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = 88.113047 kcal Electronic energy + Delta-G solvation = -13566.052638 eV Core-core repulsion = 11159.040011 eV Total energy + Delta-G solvation = -2407.012627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.79893 -40.93468 -35.97683 -34.70339 -33.29684 -31.52259 -30.70908 -27.01624 -25.09040 -25.03582 -22.32406 -21.58982 -19.94423 -18.34754 -17.78477 -16.84554 -16.26198 -15.83940 -15.63384 -15.11862 -14.95836 -14.54107 -14.49095 -13.96379 -13.20295 -12.79904 -12.08963 -11.88006 -11.74247 -11.62995 -11.21944 -10.97890 -10.77436 -10.07797 -9.92629 -9.42125 -9.09778 -6.16182 -0.23920 0.26179 1.31021 1.53287 1.58272 1.86332 2.12126 2.20447 2.39651 3.02464 3.29213 3.42043 3.47526 3.76080 4.20405 4.30539 4.34339 4.69369 4.70603 5.03593 5.20690 5.52805 5.62774 5.85038 6.09802 6.25544 6.65833 6.79646 6.84028 7.13723 7.39167 8.11084 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.011529 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.177456 B = 2427.993822 C = 3318.514532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.002 3.998 3 Si 1.118 2.882 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.030 4.030 11 N -0.275 5.275 12 N -0.480 5.480 13 H 0.437 0.563 14 C -0.111 4.111 15 C 0.257 3.743 16 C -0.257 4.257 17 C 0.153 3.847 18 N -0.564 5.564 19 C 0.289 3.711 20 N -0.544 5.544 21 H 0.283 0.717 22 H 0.171 0.829 23 H 0.155 0.845 24 H 0.202 0.798 25 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -5.401 -0.798 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.214 4.214 3 Si 0.935 3.065 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.510 4.510 8 H 0.096 0.904 9 C -0.007 4.007 10 C -0.220 4.220 11 N -0.099 5.099 12 N -0.201 5.201 13 H 0.281 0.719 14 C -0.229 4.229 15 C 0.116 3.884 16 C -0.281 4.281 17 C -0.010 4.010 18 N -0.281 5.281 19 C 0.001 3.999 20 N -0.261 5.261 21 H 0.095 0.905 22 H 0.188 0.812 23 H 0.173 0.827 24 H 0.219 0.781 25 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.622 -3.945 -0.898 6.926 hybrid contribution 0.010 -2.202 0.228 2.214 sum 5.631 -6.148 -0.669 8.364 Atomic orbital electron populations 1.70600 1.08753 1.33072 1.32255 1.28385 0.95740 1.07106 0.90145 0.82973 0.74693 0.69954 0.78861 1.19465 1.18931 1.18785 1.20147 1.01310 0.92753 1.36797 0.90412 1.18578 0.93552 0.92741 0.95845 1.23929 1.01088 0.94021 1.02937 1.76164 1.12931 1.03658 1.17141 1.45173 1.22044 1.07394 1.45475 0.71892 1.18748 1.01293 0.90387 1.12513 1.19051 0.90476 0.89843 0.89027 1.22894 1.01169 0.98753 1.05234 1.23541 0.91010 0.98772 0.87725 1.68441 1.32463 1.05357 1.21839 1.25318 0.87478 0.91634 0.95483 1.68616 1.14178 1.36288 1.07002 0.90455 0.81240 0.82704 0.78086 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.98 12.65 21.85 0.28 -42.71 15 2 C 0.00 0.08 5.30 85.28 0.45 0.53 15 3 Si 1.12 42.85 29.99 68.60 2.06 44.91 15 4 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 5 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 15 7 C -0.48 -25.47 8.65 23.35 0.20 -25.27 15 8 H 0.08 4.21 6.96 -2.91 -0.02 4.19 15 9 C 0.00 0.20 5.58 -21.13 -0.12 0.08 15 10 C -0.03 -1.50 9.96 85.80 0.85 -0.64 15 11 N -0.28 -12.77 12.57 -56.06 -0.70 -13.47 15 12 N -0.48 -20.17 7.31 -46.69 -0.34 -20.51 15 13 H 0.44 14.53 8.88 -213.48 -1.90 12.63 15 14 C -0.11 -5.26 7.04 41.46 0.29 -4.96 15 15 C 0.26 10.97 6.70 41.73 0.28 11.25 15 16 C -0.26 -8.35 9.90 22.77 0.23 -8.12 15 17 C 0.15 4.31 11.29 84.59 0.96 5.26 15 18 N -0.56 -18.33 10.43 -200.32 -2.09 -20.42 15 19 C 0.29 10.32 12.28 180.92 2.22 12.54 15 20 N -0.54 -23.75 8.82 -189.42 -1.67 -25.42 15 21 H 0.28 15.29 6.14 -92.71 -0.57 14.72 15 22 H 0.17 8.39 6.85 -2.91 -0.02 8.37 15 23 H 0.16 4.07 7.98 -2.91 -0.02 4.05 15 24 H 0.20 3.67 8.06 -2.91 -0.02 3.64 15 25 H 0.21 6.02 8.06 -2.91 -0.02 6.00 15 Total: -1.00 -62.85 232.71 2.44 -60.42 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -0.46 Total: 26.53 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 5.36 Total: -9.34 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -4.53 Total: -122.52 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.06 Total: 44.91 kcal Total: -62.85 2.44 -60.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662167.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.532 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds